RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 NSMCE3Q96MG7 304 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 GDAP1L1Q96MZ0 367 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 CINPQ9BW66 212 aaPredicted RBP11.84□□□□□ -0.51
CUX1-207ENST00000465461 LZTFL1Q9NQ48 299 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 SCML1Q9UN30 329 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 HEY1Q9Y5J3 304 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 MYO15AQ9UKN7 3530 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 SHROOM3Q8TF72 1996 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 SPAG17Q6Q759 2223 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 GPR179Q6PRD1 2367 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 CXorf51AA0A1B0GTR3 108 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 BCLAF3A2AJT9 711 aaKnown RBP11.83□□□□□ -0.52
CUX1-207ENST00000465461 METTL12A8MUP2 240 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 MEI4A8MW99 385 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 APOL1O14791 398 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 ZRANB2O95218 330 aaKnown RBP eCLIP11.83□□□□□ -0.52
CUX1-207ENST00000465461 IGSF6O95976 241 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 PRNPP04156 253 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 UGT2B4P06133 528 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 ITIH2P19823 946 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 TGM1P22735 817 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 CTNNA1P35221 906 aaKnown RBP11.83□□□□□ -0.52
CUX1-207ENST00000465461 SERPINB6P35237 376 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 MPLP40238 635 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 GARSP41250 739 aaKnown RBP11.83□□□□□ -0.52
CUX1-207ENST00000465461 ADPRHP54922 357 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 TAS2R38P59533 333 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 MAXP61244 160 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 GALNT2Q10471 571 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 GSE1Q14687 1217 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 SF3A2Q15428 464 aaKnown RBP11.83□□□□□ -0.52
CUX1-207ENST00000465461 LRRC73Q5JTD7 316 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 PIP5KL1Q5T9C9 394 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 AGBL4Q5VU57 503 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 SLC9A4Q6AI14 798 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 KATNAL2Q8IYT4 538 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 CASKIN2Q8WXE0 1202 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 HAUS1Q96CS2 278 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 KLHL32Q96NJ5 620 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 LGMNQ99538 433 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 HERPUD2Q9BSE4 406 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 HEMGNQ9BXL5 484 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 MIR1-1HGQ9H1L0 117 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 KCNF1Q9H3M0 494 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 SGK2Q9HBY8 427 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 DTLQ9NZJ0 730 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 PCDHA3Q9Y5H8 950 aa11.83□□□□□ -0.52
CUX1-207ENST00000465461 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.83□□□□□ -0.52
CUX1-207ENST00000465461 TNRC6BQ9UPQ9 1833 aaKnown RBP11.83□□□□□ -0.52
CUX1-207ENST00000465461 hCG_1818297A0A087WSY0 165 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 TBC1D3DA0A087WVF3 549 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 TBC1D3IA0A087WXS9 549 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 TBC1D3EA0A087X179 549 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 TBC1D3KA0A087X1G2 549 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 TBC1D3FA6NER0 549 aaPredicted RBP11.82□□□□□ -0.52
CUX1-207ENST00000465461 TBC1D3LB9A6J9 549 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 CST8O60676 142 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 POP4O95707 220 aaKnown RBP11.82□□□□□ -0.52
CUX1-207ENST00000465461 PTMAP06454 111 aaKnown RBP11.82□□□□□ -0.52
CUX1-207ENST00000465461 CCDC175P0C221 793 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 TBC1D3HP0C7X1 549 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 PECAM1P16284 738 aaPredicted RBP11.82□□□□□ -0.52
CUX1-207ENST00000465461 CTNNA2P26232 953 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 PEX5P50542 639 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 SCNN1BP51168 640 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 PPP2CBP62714 309 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 PPP2CAP67775 309 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 ZNF211Q13398 564 aaPredicted RBP11.82□□□□□ -0.52
CUX1-207ENST00000465461 TAZQ16635 292 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 TMCO4Q5TGY1 634 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 KIAA0895LQ68EN5 471 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 TBC1D3GQ6DHY5 549 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 TBC1D3CQ6IPX1 549 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 GDPD4Q6W3E5 623 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 ERN2Q76MJ5 926 aaKnown RBP11.82□□□□□ -0.52
CUX1-207ENST00000465461 PARS2Q7L3T8 475 aaKnown RBP11.82□□□□□ -0.52
CUX1-207ENST00000465461 PEX26Q7Z412 305 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 SRLQ86TD4 932 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 PLPP6Q8IY26 295 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 RCOR2Q8IZ40 523 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 TBC1D3Q8IZP1 549 aaPredicted RBP11.82□□□□□ -0.52
CUX1-207ENST00000465461 CCNYQ8ND76 341 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 ALG3Q92685 438 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 KLK6Q92876 244 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 BIRC7Q96CA5 298 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 LOXL4Q96JB6 756 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 EBF2Q9HAK2 575 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 DYRK4Q9NR20 520 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 RXFP3Q9NSD7 469 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 SEMA4GQ9NTN9 838 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 EIF2B4Q9UI10 523 aaKnown RBP11.82□□□□□ -0.52
CUX1-207ENST00000465461 PILRBQ9UKJ0 227 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 AMFRQ9UKV5 643 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 FZD4Q9ULV1 537 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 ITM2BQ9Y287 266 aa11.82□□□□□ -0.52
CUX1-207ENST00000465461 DMDP11532 3685 aa11.81□□□□□ -0.52
CUX1-207ENST00000465461 C16orf96A6NNT2 1141 aa11.81□□□□□ -0.52
CUX1-207ENST00000465461 DDX3YO15523 660 aaKnown RBP11.81□□□□□ -0.52
CUX1-207ENST00000465461 PLRG1O43660 514 aaKnown RBP11.81□□□□□ -0.52
CUX1-207ENST00000465461 PRKCGP05129 697 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms