RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 IGLON5A6NGN9 336 aa23.02■■□□□ 1.28
USP4-208ENST00000464168 ACVRL1P37023 503 aa23.02■■□□□ 1.28
USP4-208ENST00000464168 RABIFP47224 123 aa23.02■■□□□ 1.28
USP4-208ENST00000464168 SGCGQ13326 291 aa23.02■■□□□ 1.28
USP4-208ENST00000464168 TPD52L1Q16890 204 aaPredicted RBP23.02■■□□□ 1.28
USP4-208ENST00000464168 TPRG1LQ5T0D9 272 aa23.02■■□□□ 1.28
USP4-208ENST00000464168 KLHDC7AQ5VTJ3 777 aa23.02■■□□□ 1.28
USP4-208ENST00000464168 ARCQ7LC44 396 aa23.02■■□□□ 1.28
USP4-208ENST00000464168 NOP9Q86U38 636 aaKnown RBP23.02■■□□□ 1.28
USP4-208ENST00000464168 PLPP6Q8IY26 295 aa23.02■■□□□ 1.28
USP4-208ENST00000464168 MAPK15Q8TD08 544 aa23.02■■□□□ 1.28
USP4-208ENST00000464168 ISG20Q96AZ6 181 aaKnown RBP23.02■■□□□ 1.28
USP4-208ENST00000464168 NAA15Q9BXJ9 866 aaKnown RBP23.02■■□□□ 1.28
USP4-208ENST00000464168 TM6SF2Q9BZW4 377 aa23.02■■□□□ 1.28
USP4-208ENST00000464168 ZDHHC6Q9H6R6 413 aa23.02■■□□□ 1.28
USP4-208ENST00000464168 EVA1BQ9NVM1 165 aa23.02■■□□□ 1.28
USP4-208ENST00000464168 TENM4Q6N022 2769 aa23.01■■□□□ 1.27
USP4-208ENST00000464168 C16orf96A6NNT2 1141 aa23.01■■□□□ 1.27
USP4-208ENST00000464168 FPGTO14772 594 aa23.01■■□□□ 1.27
USP4-208ENST00000464168 SPINT1O43278 529 aa23.01■■□□□ 1.27
USP4-208ENST00000464168 LZTS3O60299 673 aaPredicted RBP23.01■■□□□ 1.27
USP4-208ENST00000464168 LSM8O95777 96 aaKnown RBP23.01■■□□□ 1.27
USP4-208ENST00000464168 GKP32189 559 aa23.01■■□□□ 1.27
USP4-208ENST00000464168 RAB6CQ53S08 254 aa23.01■■□□□ 1.27
USP4-208ENST00000464168 ZCCHC8Q6NZY4 707 aaKnown RBP23.01■■□□□ 1.27
USP4-208ENST00000464168 ZNF843Q8N446 348 aa23.01■■□□□ 1.27
USP4-208ENST00000464168 CPA5Q8WXQ8 436 aa23.01■■□□□ 1.27
USP4-208ENST00000464168 VOPP1Q96AW1 172 aa23.01■■□□□ 1.27
USP4-208ENST00000464168 TUBGCP2Q9BSJ2 902 aa23.01■■□□□ 1.27
USP4-208ENST00000464168 RAB6CQ9H0N0 254 aa23.01■■□□□ 1.27
USP4-208ENST00000464168 ASCL3Q9NQ33 180 aa23.01■■□□□ 1.27
USP4-208ENST00000464168 NDFIP2Q9NV92 336 aa23.01■■□□□ 1.27
USP4-208ENST00000464168 IPO11Q9UI26 975 aaKnown RBP23.01■■□□□ 1.27
USP4-208ENST00000464168 CXorf51AA0A1B0GTR3 108 aa23■■□□□ 1.27
USP4-208ENST00000464168 H3BM21 787 aa23■■□□□ 1.27
USP4-208ENST00000464168 AQP9O43315 295 aa23■■□□□ 1.27
USP4-208ENST00000464168 TSPAN6O43657 245 aa23■■□□□ 1.27
USP4-208ENST00000464168 PRKCSHP14314 528 aaPredicted RBP23■■□□□ 1.27
USP4-208ENST00000464168 TGM2P21980 687 aa23■■□□□ 1.27
USP4-208ENST00000464168 ABL2P42684 1182 aa23■■□□□ 1.27
USP4-208ENST00000464168 ERVPABLB-1P60509 514 aa23■■□□□ 1.27
USP4-208ENST00000464168 PFN3P60673 137 aa23■■□□□ 1.27
USP4-208ENST00000464168 ATP11AP98196 1134 aa23■■□□□ 1.27
USP4-208ENST00000464168 PDE1CQ14123 709 aaPredicted RBP23■■□□□ 1.27
USP4-208ENST00000464168 CDKN3Q16667 212 aa23■■□□□ 1.27
USP4-208ENST00000464168 ISXQ2M1V0 245 aa23■■□□□ 1.27
USP4-208ENST00000464168 ZSCAN30Q86W11 494 aa23■■□□□ 1.27
USP4-208ENST00000464168 FAM114A1Q8IWE2 563 aa23■■□□□ 1.27
USP4-208ENST00000464168 OR6K2Q8NGY2 324 aa23■■□□□ 1.27
USP4-208ENST00000464168 ASB12Q8WXK4 309 aa23■■□□□ 1.27
USP4-208ENST00000464168 RAB7BQ96AH8 199 aa23■■□□□ 1.27
USP4-208ENST00000464168 OR12D3Q9UGF7 316 aa23■■□□□ 1.27
USP4-208ENST00000464168 GGT7Q9UJ14 662 aa23■■□□□ 1.27
USP4-208ENST00000464168 A0A1W2PNU3 283 aaPredicted RBP22.99■■□□□ 1.27
USP4-208ENST00000464168 CPED1A4D0V7 1026 aa22.99■■□□□ 1.27
USP4-208ENST00000464168 JUNDP17535 347 aa22.99■■□□□ 1.27
USP4-208ENST00000464168 ADRA1BP35368 520 aa22.99■■□□□ 1.27
USP4-208ENST00000464168 NOMO3P69849 1222 aa22.99■■□□□ 1.27
USP4-208ENST00000464168 EIF2B5Q13144 721 aaKnown RBP22.99■■□□□ 1.27
USP4-208ENST00000464168 DEFB133Q30KQ1 61 aa22.99■■□□□ 1.27
USP4-208ENST00000464168 ZNF805Q5CZA5 627 aa22.99■■□□□ 1.27
USP4-208ENST00000464168 MANEALQ5VSG8 457 aa22.99■■□□□ 1.27
USP4-208ENST00000464168 NAA35Q5VZE5 725 aa22.99■■□□□ 1.27
USP4-208ENST00000464168 GUSBP11Q6P575 273 aa22.99■■□□□ 1.27
USP4-208ENST00000464168 NLRP14Q86W24 1093 aa22.99■■□□□ 1.27
USP4-208ENST00000464168 EMC1Q8N766 993 aa22.99■■□□□ 1.27
USP4-208ENST00000464168 CPNE5Q9HCH3 593 aa22.99■■□□□ 1.27
USP4-208ENST00000464168 NCKIPSDQ9NZQ3 722 aa22.99■■□□□ 1.27
USP4-208ENST00000464168 SALL4Q9UJQ4 1053 aa22.99■■□□□ 1.27
USP4-208ENST00000464168 ITM2BQ9Y287 266 aa22.99■■□□□ 1.27
USP4-208ENST00000464168 NEMP1O14524 444 aa22.98■■□□□ 1.27
USP4-208ENST00000464168 MMEP08473 750 aa22.98■■□□□ 1.27
USP4-208ENST00000464168 UCHL3P15374 230 aa22.98■■□□□ 1.27
USP4-208ENST00000464168 ETFBP38117 255 aa22.98■■□□□ 1.27
USP4-208ENST00000464168 UBE2HP62256 183 aa22.98■■□□□ 1.27
USP4-208ENST00000464168 NRG1Q02297 640 aaPredicted RBP22.98■■□□□ 1.27
USP4-208ENST00000464168 HSP90AA4PQ58FG1 418 aa22.98■■□□□ 1.27
USP4-208ENST00000464168 EFL1Q7Z2Z2 1120 aaKnown RBP22.98■■□□□ 1.27
USP4-208ENST00000464168 RYBPQ8N488 228 aaPredicted RBP22.98■■□□□ 1.27
USP4-208ENST00000464168 MSANTD4Q8NCY6 345 aa22.98■■□□□ 1.27
USP4-208ENST00000464168 DENND6BQ8NEG7 585 aa22.98■■□□□ 1.27
USP4-208ENST00000464168 LMX1AQ8TE12 382 aa22.98■■□□□ 1.27
USP4-208ENST00000464168 ARHGEF2Q92974 986 aaKnown RBP22.98■■□□□ 1.27
USP4-208ENST00000464168 CENPTQ96BT3 561 aa22.98■■□□□ 1.27
USP4-208ENST00000464168 PIEZO2Q9H5I5 2752 aa22.97■■□□□ 1.27
USP4-208ENST00000464168 EME2A4GXA9 379 aaPredicted RBP22.97■■□□□ 1.27
USP4-208ENST00000464168 FAM72CH0Y354 149 aa22.97■■□□□ 1.27
USP4-208ENST00000464168 ERVH48-1M5A8F1 160 aa22.97■■□□□ 1.27
USP4-208ENST00000464168 TPP1O14773 563 aa22.97■■□□□ 1.27
USP4-208ENST00000464168 PLA2G2AP14555 144 aa22.97■■□□□ 1.27
USP4-208ENST00000464168 RHOQP17081 205 aa22.97■■□□□ 1.27
USP4-208ENST00000464168 UCNP55089 124 aa22.97■■□□□ 1.27
USP4-208ENST00000464168 TMPRSS3P57727 454 aa22.97■■□□□ 1.27
USP4-208ENST00000464168 MYLK3Q32MK0 819 aa22.97■■□□□ 1.27
USP4-208ENST00000464168 CCDC14Q49A88 953 aa22.97■■□□□ 1.27
USP4-208ENST00000464168 FAM72AQ5TYM5 149 aa22.97■■□□□ 1.27
USP4-208ENST00000464168 BROXQ5VW32 411 aa22.97■■□□□ 1.27
USP4-208ENST00000464168 FAM72DQ6L9T8 149 aa22.97■■□□□ 1.27
USP4-208ENST00000464168 RWDD4Q6NW29 188 aaKnown RBP22.97■■□□□ 1.27
USP4-208ENST00000464168 FAM72BQ86X60 149 aa22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms