RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 SORCS1Q8WY21 1168 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 NUDCD1Q96RS6 583 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 TUBGCP5Q96RT8 1024 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 SEMA3CQ99985 751 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 MGME1Q9BQP7 344 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 OSBPL1AQ9BXW6 950 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 ADGRE3Q9BY15 652 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 CEP41Q9BYV8 373 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 OSBPL6Q9BZF3 934 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 TM6SF2Q9BZW4 377 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 C10orf88Q9H8K7 445 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 POLMQ9NP87 494 aaPredicted RBP10.24□□□□□ -0.77
CD44-207ENST00000425428 FAM114A2Q9NRY5 505 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 FAM153AQ9UHL3 310 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 ATP8A1Q9Y2Q0 1164 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 ARIH1Q9Y4X5 557 aaPredicted RBP10.24□□□□□ -0.77
CD44-207ENST00000425428 STON1Q9Y6Q2 735 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 ALOX15BO15296 676 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 RAD51CO43502 376 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 ALDH1A2O94788 518 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 HEXIM1O94992 359 aaKnown RBP10.24□□□□□ -0.77
CD44-207ENST00000425428 KLF8O95600 359 aaPredicted RBP10.24□□□□□ -0.77
CD44-207ENST00000425428 MT-CO1P00395 513 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 HLA-DQB2P05538 268 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 ITIH2P19823 946 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 CDK16Q00536 496 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 WASHC5Q12768 1159 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 ZBTB17Q13105 803 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 ELAVL3Q14576 367 aaKnown RBP10.24□□□□□ -0.77
CD44-207ENST00000425428 CYTH1Q15438 398 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 HNRNPA1L2Q32P51 320 aaKnown RBP10.24□□□□□ -0.77
CD44-207ENST00000425428 TMEM215Q68D42 235 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 NAPEPLDQ6IQ20 393 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 FSTL4Q6MZW2 842 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 TTC27Q6P3X3 843 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 TXNDC11Q6PKC3 985 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 PHTF2Q8N3S3 785 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 RUBCNQ92622 972 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 FCRL5Q96RD9 977 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 HEPHQ9BQS7 1158 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 ERP44Q9BS26 406 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 IER2Q9BTL4 223 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 LRRC1Q9BTT6 524 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 FRMD8Q9BZ67 464 aaPredicted RBP10.24□□□□□ -0.77
CD44-207ENST00000425428 FAM129AQ9BZQ8 928 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 TRIM31Q9BZY9 425 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 TSPYL1Q9H0U9 437 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 ZDHHC6Q9H6R6 413 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 LRRC40Q9H9A6 602 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 TBC1D17Q9HA65 648 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 LMAN1LQ9HAT1 526 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 MTRF1LQ9UGC7 380 aaKnown RBP10.24□□□□□ -0.77
CD44-207ENST00000425428 IL36AQ9UHA7 158 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 SLCO3A1Q9UIG8 710 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 TPX2Q9ULW0 747 aaKnown RBP10.24□□□□□ -0.77
CD44-207ENST00000425428 COL4A2P08572 1712 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 TTC34A8MYJ7 566 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 K7EQS6 105 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 RIOK3O14730 519 aaKnown RBP10.23□□□□□ -0.77
CD44-207ENST00000425428 RNF40O75150 1001 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 APRTP07741 180 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 RHOXF2BP0C7M4 288 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 ACADMP11310 421 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 HOXB2P14652 356 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 NFKB1P19838 968 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 CD72P21854 359 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 RPL22P35268 128 aaKnown RBP10.23□□□□□ -0.77
CD44-207ENST00000425428 CD86P42081 329 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 GDF10P55107 478 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 MAXP61244 160 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 HLTFQ14527 1009 aaKnown RBP eCLIP10.23□□□□□ -0.77
CD44-207ENST00000425428 SLC14A2Q15849 920 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 MYLK3Q32MK0 819 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 EGFLAMQ63HQ2 1017 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 Q6ZVU0 165 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 PPIL6Q8IXY8 311 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 FLCNQ8NFG4 579 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 RPLP0P6Q8NHW5 317 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 PDCD6IPQ8WUM4 868 aaKnown RBP10.23□□□□□ -0.77
CD44-207ENST00000425428 EDAQ92838 391 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 EXOC2Q96KP1 924 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 ZNF641Q96N77 438 aaPredicted RBP10.23□□□□□ -0.77
CD44-207ENST00000425428 SRPK1Q96SB4 655 aaKnown RBP10.23□□□□□ -0.77
CD44-207ENST00000425428 RHOXF2Q9BQY4 288 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 TNKS2Q9H2K2 1166 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 LTB4R2Q9NPC1 389 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 CACNA2D2Q9NY47 1150 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 ANAPC5Q9UJX4 755 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 SIT1Q9Y3P8 196 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 PRUNE2Q8WUY3 3088 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 XIRP2A4UGR9 3374 aa10.23□□□□□ -0.77
CD44-207ENST00000425428 EYSQ5T1H1 3165 aa10.22□□□□□ -0.77
CD44-207ENST00000425428 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.22□□□□□ -0.77
CD44-207ENST00000425428 K7ERQ8 282 aa10.22□□□□□ -0.77
CD44-207ENST00000425428 SMAD6O43541 496 aaKnown RBP10.22□□□□□ -0.77
CD44-207ENST00000425428 SOCS5O75159 536 aa10.22□□□□□ -0.77
CD44-207ENST00000425428 PSMB4P28070 264 aa10.22□□□□□ -0.77
CD44-207ENST00000425428 PTGIRP43119 386 aa10.22□□□□□ -0.77
CD44-207ENST00000425428 CCNHP51946 323 aaPredicted RBP10.22□□□□□ -0.77
CD44-207ENST00000425428 GUCY2DQ02846 1103 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms