RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 VANGL2Q9ULK5 521 aa15.05■□□□□ -0
USP4-203ENST00000415188 HBS1LQ9Y450 684 aaKnown RBP15.05■□□□□ -0
USP4-203ENST00000415188 RPS6KL1Q9Y6S9 549 aa15.05■□□□□ -0
USP4-203ENST00000415188 FAM72CH0Y354 149 aa15.04■□□□□ -0
USP4-203ENST00000415188 TPP1O14773 563 aa15.04■□□□□ -0
USP4-203ENST00000415188 ADAM12O43184 909 aa15.04■□□□□ -0
USP4-203ENST00000415188 PLIN3O60664 434 aa15.04■□□□□ -0
USP4-203ENST00000415188 ALDOAP04075 364 aaKnown RBP15.04■□□□□ -0
USP4-203ENST00000415188 MPOP05164 745 aa15.04■□□□□ -0
USP4-203ENST00000415188 SERPINB8P50452 374 aa15.04■□□□□ -0
USP4-203ENST00000415188 PDE1BQ01064 536 aa15.04■□□□□ -0
USP4-203ENST00000415188 E2F5Q15329 346 aa15.04■□□□□ -0
USP4-203ENST00000415188 CCDC153Q494R4 210 aa15.04■□□□□ -0
USP4-203ENST00000415188 FASTKD1Q53R41 847 aaKnown RBP15.04■□□□□ -0
USP4-203ENST00000415188 FAM72AQ5TYM5 149 aa15.04■□□□□ -0
USP4-203ENST00000415188 FAM72DQ6L9T8 149 aa15.04■□□□□ -0
USP4-203ENST00000415188 LINC00523Q86TU6 105 aa15.04■□□□□ -0
USP4-203ENST00000415188 TMEM135Q86UB9 458 aa15.04■□□□□ -0
USP4-203ENST00000415188 FAM72BQ86X60 149 aa15.04■□□□□ -0
USP4-203ENST00000415188 GPR65Q8IYL9 337 aa15.04■□□□□ -0
USP4-203ENST00000415188 THEM5Q8N1Q8 247 aa15.04■□□□□ -0
USP4-203ENST00000415188 PPP1R14CQ8TAE6 165 aa15.04■□□□□ -0
USP4-203ENST00000415188 KCNK16Q96T55 309 aa15.04■□□□□ -0
USP4-203ENST00000415188 PKMYT1Q99640 499 aa15.04■□□□□ -0
USP4-203ENST00000415188 RTP3Q9BQQ7 232 aa15.04■□□□□ -0
USP4-203ENST00000415188 CLSTN3Q9BQT9 956 aa15.04■□□□□ -0
USP4-203ENST00000415188 RNPEPL1Q9HAU8 725 aa15.04■□□□□ -0
USP4-203ENST00000415188 ARL8BQ9NVJ2 186 aa15.04■□□□□ -0
USP4-203ENST00000415188 DPP7Q9UHL4 492 aa15.04■□□□□ -0
USP4-203ENST00000415188 MID2Q9UJV3 735 aa15.04■□□□□ -0
USP4-203ENST00000415188 C15orf41Q9Y2V0 281 aa15.04■□□□□ -0
USP4-203ENST00000415188 KMT2EQ8IZD2 1858 aa15.04■□□□□ -0
USP4-203ENST00000415188 A8MUI8 341 aa15.03■□□□□ -0
USP4-203ENST00000415188 KCNK1O00180 336 aa15.03■□□□□ -0
USP4-203ENST00000415188 FGF10O15520 208 aaPredicted RBP15.03■□□□□ -0
USP4-203ENST00000415188 IGLV3-25P01717 112 aa15.03■□□□□ -0
USP4-203ENST00000415188 SERPINE1P05121 402 aa15.03■□□□□ -0
USP4-203ENST00000415188 ESRRAP11474 423 aaPredicted RBP15.03■□□□□ -0
USP4-203ENST00000415188 AVPR2P30518 371 aa15.03■□□□□ -0
USP4-203ENST00000415188 HOXC13P31276 330 aa15.03■□□□□ -0
USP4-203ENST00000415188 LIMK2P53671 638 aa15.03■□□□□ -0
USP4-203ENST00000415188 PDE1CQ14123 709 aaPredicted RBP15.03■□□□□ -0
USP4-203ENST00000415188 PSMD5Q16401 504 aa15.03■□□□□ -0
USP4-203ENST00000415188 N4BP2L1Q5TBK1 243 aaPredicted RBP15.03■□□□□ -0
USP4-203ENST00000415188 BSPRYQ5W0U4 402 aa15.03■□□□□ -0
USP4-203ENST00000415188 NAPEPLDQ6IQ20 393 aa15.03■□□□□ -0
USP4-203ENST00000415188 ELMSAN1Q6PJG2 1045 aa15.03■□□□□ -0
USP4-203ENST00000415188 CD300LGQ6UXG3 332 aa15.03■□□□□ -0
USP4-203ENST00000415188 TAC4Q86UU9 113 aa15.03■□□□□ -0
USP4-203ENST00000415188 LZTR1Q8N653 840 aa15.03■□□□□ -0
USP4-203ENST00000415188 ENDOVQ8N8Q3 282 aaKnown RBP15.03■□□□□ -0
USP4-203ENST00000415188 OR52K1Q8NGK4 314 aa15.03■□□□□ -0
USP4-203ENST00000415188 ZNF669Q96BR6 464 aaPredicted RBP15.03■□□□□ -0
USP4-203ENST00000415188 TEKT5Q96M29 485 aa15.03■□□□□ -0
USP4-203ENST00000415188 HAPLN3Q96S86 360 aa15.03■□□□□ -0
USP4-203ENST00000415188 RBBP8Q99708 897 aa15.03■□□□□ -0
USP4-203ENST00000415188 GORASP1Q9BQQ3 440 aa15.03■□□□□ -0
USP4-203ENST00000415188 MECRQ9BV79 373 aa15.03■□□□□ -0
USP4-203ENST00000415188 IL22Q9GZX6 179 aa15.03■□□□□ -0
USP4-203ENST00000415188 TKTL2Q9H0I9 626 aa15.03■□□□□ -0
USP4-203ENST00000415188 ANLNQ9NQW6 1124 aa15.03■□□□□ -0
USP4-203ENST00000415188 ARHGEF38Q9NXL2 777 aa15.03■□□□□ -0
USP4-203ENST00000415188 OR12D3Q9UGF7 316 aa15.03■□□□□ -0
USP4-203ENST00000415188 TIMM13Q9Y5L4 95 aaPredicted RBP15.03■□□□□ -0
USP4-203ENST00000415188 ZBTB24O43167 697 aaPredicted RBP15.02■□□□□ -0
USP4-203ENST00000415188 TIMM44O43615 452 aa15.02■□□□□ -0
USP4-203ENST00000415188 CACNG3O60359 315 aa15.02■□□□□ -0
USP4-203ENST00000415188 H2AFYO75367 372 aaKnown RBP15.02■□□□□ -0
USP4-203ENST00000415188 B3GAT3O94766 335 aa15.02■□□□□ -0
USP4-203ENST00000415188 ANP32DO95626 131 aa15.02■□□□□ -0
USP4-203ENST00000415188 PROCP04070 461 aa15.02■□□□□ -0
USP4-203ENST00000415188 EPHB2P29323 1055 aa15.02■□□□□ -0
USP4-203ENST00000415188 CACNA2D1P54289 1103 aa15.02■□□□□ -0
USP4-203ENST00000415188 CRADDP78560 199 aa15.02■□□□□ -0
USP4-203ENST00000415188 TSPY1Q01534 308 aa15.02■□□□□ -0
USP4-203ENST00000415188 CREMQ03060 361 aa15.02■□□□□ -0
USP4-203ENST00000415188 TCF15Q12870 199 aa15.02■□□□□ -0
USP4-203ENST00000415188 ANKRD20A4Q4UJ75 823 aa15.02■□□□□ -0
USP4-203ENST00000415188 FAM182AQ5T1J6 154 aa15.02■□□□□ -0
USP4-203ENST00000415188 MBLAC2Q68D91 279 aa15.02■□□□□ -0
USP4-203ENST00000415188 LCA5Q86VQ0 697 aa15.02■□□□□ -0
USP4-203ENST00000415188 ARID3BQ8IVW6 561 aaPredicted RBP15.02■□□□□ -0
USP4-203ENST00000415188 WDR75Q8IWA0 830 aaKnown RBP15.02■□□□□ -0
USP4-203ENST00000415188 CCDC117Q8IWD4 279 aaPredicted RBP15.02■□□□□ -0
USP4-203ENST00000415188 NPWQ8N729 165 aa15.02■□□□□ -0
USP4-203ENST00000415188 ADAM32Q8TC27 787 aa15.02■□□□□ -0
USP4-203ENST00000415188 DQX1Q8TE96 717 aaKnown RBP15.02■□□□□ -0
USP4-203ENST00000415188 SREK1Q8WXA9 508 aaKnown RBP15.02■□□□□ -0
USP4-203ENST00000415188 SUSD3Q96L08 255 aa15.02■□□□□ -0
USP4-203ENST00000415188 MYADMQ96S97 322 aa15.02■□□□□ -0
USP4-203ENST00000415188 PHOX2BQ99453 314 aa15.02■□□□□ -0
USP4-203ENST00000415188 RHOBTB2Q9BYZ6 727 aa15.02■□□□□ -0
USP4-203ENST00000415188 YY1AP1Q9H869 796 aa15.02■□□□□ -0
USP4-203ENST00000415188 KCNK12Q9HB15 430 aa15.02■□□□□ -0
USP4-203ENST00000415188 PIDD1Q9HB75 910 aa15.02■□□□□ -0
USP4-203ENST00000415188 TMEM30AQ9NV96 361 aa15.02■□□□□ -0
USP4-203ENST00000415188 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.02■□□□□ -0
USP4-203ENST00000415188 EMCNQ9ULC0 261 aa15.02■□□□□ -0
USP4-203ENST00000415188 SOX13Q9UN79 622 aa15.02■□□□□ -0
USP4-203ENST00000415188 EPB41L3Q9Y2J2 1087 aaPredicted RBP15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms