RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 CDH22Q9UJ99 828 aa14.26□□□□□ -0.13
GPNMB-203ENST00000409458 FAM159BA6NKW6 160 aa14.25□□□□□ -0.13
GPNMB-203ENST00000409458 AP3B1O00203 1094 aa14.25□□□□□ -0.13
GPNMB-203ENST00000409458 ALDH1A2O94788 518 aa14.25□□□□□ -0.13
GPNMB-203ENST00000409458 CYBBP04839 570 aa14.25□□□□□ -0.13
GPNMB-203ENST00000409458 CREB1P16220 341 aa14.25□□□□□ -0.13
GPNMB-203ENST00000409458 CD70P32970 193 aa14.25□□□□□ -0.13
GPNMB-203ENST00000409458 BMP8BP34820 402 aa14.25□□□□□ -0.13
GPNMB-203ENST00000409458 MSH2P43246 934 aa14.25□□□□□ -0.13
GPNMB-203ENST00000409458 RASA2Q15283 850 aa14.25□□□□□ -0.13
GPNMB-203ENST00000409458 EMC10Q5UCC4 262 aa14.25□□□□□ -0.13
GPNMB-203ENST00000409458 ADGRD1Q6QNK2 874 aa14.25□□□□□ -0.13
GPNMB-203ENST00000409458 RANBP10Q6VN20 620 aa14.25□□□□□ -0.13
GPNMB-203ENST00000409458 TMEM25Q86YD3 366 aa14.25□□□□□ -0.13
GPNMB-203ENST00000409458 SLC44A1Q8WWI5 657 aa14.25□□□□□ -0.13
GPNMB-203ENST00000409458 ZNF669Q96BR6 464 aaPredicted RBP14.25□□□□□ -0.13
GPNMB-203ENST00000409458 FCRL3Q96P31 734 aaPredicted RBP14.25□□□□□ -0.13
GPNMB-203ENST00000409458 PSKH2Q96QS6 385 aa14.25□□□□□ -0.13
GPNMB-203ENST00000409458 MOCS1Q9NZB8 636 aa14.25□□□□□ -0.13
GPNMB-203ENST00000409458 SOX13Q9UN79 622 aa14.25□□□□□ -0.13
GPNMB-203ENST00000409458 RPS6KL1Q9Y6S9 549 aa14.25□□□□□ -0.13
GPNMB-203ENST00000409458 MYOFQ9NZM1 2061 aa14.24□□□□□ -0.13
GPNMB-203ENST00000409458 LINC01565O15544 149 aa14.24□□□□□ -0.13
GPNMB-203ENST00000409458 UGT1A9O60656 530 aa14.24□□□□□ -0.13
GPNMB-203ENST00000409458 USP1O94782 785 aa14.24□□□□□ -0.13
GPNMB-203ENST00000409458 TMCC1O94876 653 aa14.24□□□□□ -0.13
GPNMB-203ENST00000409458 POLBP06746 335 aa14.24□□□□□ -0.13
GPNMB-203ENST00000409458 CR2P20023 1033 aa14.24□□□□□ -0.13
GPNMB-203ENST00000409458 HYAL1Q12794 435 aa14.24□□□□□ -0.13
GPNMB-203ENST00000409458 POU6F1Q14863 301 aa14.24□□□□□ -0.13
GPNMB-203ENST00000409458 SMAD1Q15797 465 aaKnown RBP14.24□□□□□ -0.13
GPNMB-203ENST00000409458 SPANXN3Q5MJ09 141 aa14.24□□□□□ -0.13
GPNMB-203ENST00000409458 TMEM135Q86UB9 458 aa14.24□□□□□ -0.13
GPNMB-203ENST00000409458 RNF135Q8IUD6 432 aa14.24□□□□□ -0.13
GPNMB-203ENST00000409458 CTAGE3PQ8IX95 158 aa14.24□□□□□ -0.13
GPNMB-203ENST00000409458 NPAS3Q8IXF0 933 aa14.24□□□□□ -0.13
GPNMB-203ENST00000409458 SLC25A41Q8N5S1 370 aa14.24□□□□□ -0.13
GPNMB-203ENST00000409458 PPM1NQ8N819 430 aa14.24□□□□□ -0.13
GPNMB-203ENST00000409458 FIBINQ8TAL6 211 aa14.24□□□□□ -0.13
GPNMB-203ENST00000409458 LMLNQ96KR4 655 aa14.24□□□□□ -0.13
GPNMB-203ENST00000409458 NSMCE3Q96MG7 304 aa14.24□□□□□ -0.13
GPNMB-203ENST00000409458 SELENOSQ9BQE4 189 aa14.24□□□□□ -0.13
GPNMB-203ENST00000409458 LINC00597Q9H2U6 94 aa14.24□□□□□ -0.13
GPNMB-203ENST00000409458 UGT1A7Q9HAW7 530 aa14.24□□□□□ -0.13
GPNMB-203ENST00000409458 UGT1A10Q9HAW8 530 aa14.24□□□□□ -0.13
GPNMB-203ENST00000409458 UGT1A8Q9HAW9 530 aa14.24□□□□□ -0.13
GPNMB-203ENST00000409458 IL1RAPL1Q9NZN1 696 aa14.24□□□□□ -0.13
GPNMB-203ENST00000409458 SLC17A6Q9P2U8 582 aa14.24□□□□□ -0.13
GPNMB-203ENST00000409458 WNT6Q9Y6F9 365 aa14.24□□□□□ -0.13
GPNMB-203ENST00000409458 REV3LO60673 3130 aa14.24□□□□□ -0.13
GPNMB-203ENST00000409458 ZCWPW2A0A1B0GU75 182 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 NEDD8-MDP1E9PL57 170 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 FAM155BO75949 473 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 PENKP01210 267 aaPredicted RBP14.23□□□□□ -0.13
GPNMB-203ENST00000409458 ANKRD20A4Q4UJ75 823 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 TCEAL5Q5H9L2 206 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 TRABD2AQ86V40 505 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 CCDC117Q8IWD4 279 aaPredicted RBP14.23□□□□□ -0.13
GPNMB-203ENST00000409458 SRRM1Q8IYB3 904 aaKnown RBP14.23□□□□□ -0.13
GPNMB-203ENST00000409458 MZB1Q8WU39 189 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 PPP2R3CQ969Q6 453 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 RSPRY1Q96DX4 576 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 MFSD3Q96ES6 412 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 LRRC3BQ96PB8 259 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 NSUN3Q9H649 340 aaKnown RBP14.23□□□□□ -0.13
GPNMB-203ENST00000409458 NOD2Q9HC29 1040 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 CHRAC1Q9NRG0 131 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 HAUS2Q9NVX0 235 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 KIAA1522Q9P206 1035 aaPredicted RBP14.23□□□□□ -0.13
GPNMB-203ENST00000409458 TBC1D14Q9P2M4 693 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 LHX3Q9UBR4 397 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 FCF1Q9Y324 198 aaKnown RBP14.23□□□□□ -0.13
GPNMB-203ENST00000409458 FAM237BA0A1B0GVD1 139 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 CCDC78A2IDD5 438 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 INSIG1O15503 277 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 INHBAP08476 426 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 ATXN1LP0C7T5 689 aaKnown RBP14.23□□□□□ -0.13
GPNMB-203ENST00000409458 FSHRP23945 695 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 NMBRP28336 390 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 GABPB1Q06547 395 aaPredicted RBP14.23□□□□□ -0.13
GPNMB-203ENST00000409458 SLC1A5Q15758 541 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 PLEKHG6Q3KR16 790 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 PCID2Q5JVF3 399 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 CYS1Q717R9 158 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 GET4Q7L5D6 327 aaPredicted RBP14.23□□□□□ -0.13
GPNMB-203ENST00000409458 TAOK1Q7L7X3 1001 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 SLC26A11Q86WA9 606 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 RASSF3Q86WH2 238 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 LRRC6Q86X45 466 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 TNS4Q8IZW8 715 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 ARFGAP2Q8N6H7 521 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 CELF5Q8N6W0 485 aaKnown RBP14.23□□□□□ -0.13
GPNMB-203ENST00000409458 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.23□□□□□ -0.13
GPNMB-203ENST00000409458 IRF7Q92985 503 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 TTC17Q96AE7 1141 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 CERS2Q96G23 380 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 FEM1CQ96JP0 617 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 ZNF778Q96MU6 729 aa14.23□□□□□ -0.13
GPNMB-203ENST00000409458 C2orf49Q9BVC5 232 aaPredicted RBP14.23□□□□□ -0.13
GPNMB-203ENST00000409458 KIFC1Q9BW19 673 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 172.5 ms