RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 PLK1P53350 603 aa13.65□□□□□ -0.22
LIMS1-204ENST00000409441 GBE1Q04446 702 aa13.65□□□□□ -0.22
LIMS1-204ENST00000409441 KDSRQ06136 332 aa13.65□□□□□ -0.22
LIMS1-204ENST00000409441 SLC10A2Q12908 348 aaPredicted RBP13.65□□□□□ -0.22
LIMS1-204ENST00000409441 PDIA2Q13087 525 aaKnown RBP13.65□□□□□ -0.22
LIMS1-204ENST00000409441 SLC12A1Q13621 1099 aa13.65□□□□□ -0.22
LIMS1-204ENST00000409441 MLF2Q15773 248 aaPredicted RBP13.65□□□□□ -0.22
LIMS1-204ENST00000409441 GEN1Q17RS7 908 aa13.65□□□□□ -0.22
LIMS1-204ENST00000409441 PREPLQ4J6C6 727 aaPredicted RBP13.65□□□□□ -0.22
LIMS1-204ENST00000409441 AFMIDQ63HM1 303 aa13.65□□□□□ -0.22
LIMS1-204ENST00000409441 TPRG1Q6ZUI0 275 aa13.65□□□□□ -0.22
LIMS1-204ENST00000409441 KIAA0907Q7Z7F0 614 aaPredicted RBP13.65□□□□□ -0.22
LIMS1-204ENST00000409441 TP53INP2Q8IXH6 220 aa13.65□□□□□ -0.22
LIMS1-204ENST00000409441 APCDD1Q8J025 514 aa13.65□□□□□ -0.22
LIMS1-204ENST00000409441 PHTF2Q8N3S3 785 aa13.65□□□□□ -0.22
LIMS1-204ENST00000409441 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.65□□□□□ -0.22
LIMS1-204ENST00000409441 OR7D4Q8NG98 312 aa13.65□□□□□ -0.22
LIMS1-204ENST00000409441 FAM3CQ92520 227 aa13.65□□□□□ -0.22
LIMS1-204ENST00000409441 ALG14Q96F25 216 aa13.65□□□□□ -0.22
LIMS1-204ENST00000409441 MSANTD3Q96H12 275 aa13.65□□□□□ -0.22
LIMS1-204ENST00000409441 ZNF317Q96PQ6 595 aaPredicted RBP13.65□□□□□ -0.22
LIMS1-204ENST00000409441 SENP1Q9P0U3 644 aa13.65□□□□□ -0.22
LIMS1-204ENST00000409441 PAK5Q9P286 719 aa13.65□□□□□ -0.22
LIMS1-204ENST00000409441 INTS6Q9UL03 887 aaKnown RBP13.65□□□□□ -0.22
LIMS1-204ENST00000409441 HEY1Q9Y5J3 304 aa13.65□□□□□ -0.22
LIMS1-204ENST00000409441 SHISA7A6NL88 538 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 H7C0C1 242 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 DFFAO00273 331 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 MAN2B1O00754 1011 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 KIAA0754O94854 1291 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 CD72P21854 359 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 ACVRL1P37023 503 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 ATP5OP48047 213 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 PAPOLAP51003 745 aaKnown RBP13.64□□□□□ -0.23
LIMS1-204ENST00000409441 ZXDAP98168 799 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 PRKCQQ04759 706 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 XRCC4Q13426 336 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 PON2Q15165 354 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 PARP15Q460N3 678 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 PITRM1Q5JRX3 1037 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 GKAP1Q5VSY0 366 aaPredicted RBP13.64□□□□□ -0.23
LIMS1-204ENST00000409441 IL31Q6EBC2 164 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 NPNTQ6UXI9 565 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 ZNF852Q6ZMS4 543 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 CPLX4Q7Z7G2 160 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 ADIPOR2Q86V24 386 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 ARHGAP12Q8IWW6 846 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 SUGP1Q8IWZ8 645 aaKnown RBP13.64□□□□□ -0.23
LIMS1-204ENST00000409441 ZBED8Q8IZ13 594 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 CCDC33Q8N5R6 958 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 ATP11CQ8NB49 1132 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 HMCESQ96FZ2 354 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 NSRP1Q9H0G5 558 aaKnown RBP13.64□□□□□ -0.23
LIMS1-204ENST00000409441 ARHGEF3Q9NR81 526 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 DTLQ9NZJ0 730 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 VPS28Q9UK41 221 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 TMEM120BA0PK00 339 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 KRBA1A5PL33 1030 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 ARHGAP42A6NI28 874 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 PRRT4C9JH25 899 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 TIMM44O43615 452 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 MFSD11O43934 449 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 MAP3K6O95382 1288 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 APODP05090 189 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 ETFBP38117 255 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 NR2C2P49116 596 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 GRSF1Q12849 480 aaKnown RBP eCLIP13.64□□□□□ -0.23
LIMS1-204ENST00000409441 DMC1Q14565 340 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 PLEKHG6Q3KR16 790 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 FUT11Q495W5 492 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 CCDC38Q502W7 563 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 TMEM196Q5HYL7 178 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 TMEM215Q68D42 235 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 NUDT18Q6ZVK8 323 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 ZNF354CQ86Y25 554 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 CDKL3Q8IVW4 592 aaPredicted RBP13.64□□□□□ -0.23
LIMS1-204ENST00000409441 SFTPA1Q8IWL2 248 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 CACNA2D3Q8IZS8 1091 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 AHI1Q8N157 1196 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 PDIK1LQ8N165 341 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 FAM71DQ8N9W8 422 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 TERB1Q8NA31 727 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 PYROXD1Q8WU10 500 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 MAML1Q92585 1016 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 SHDQ96IW2 340 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 ACE2Q9BYF1 805 aaPredicted RBP13.64□□□□□ -0.23
LIMS1-204ENST00000409441 VPS37BQ9H9H4 285 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 ATP13A1Q9HD20 1204 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 CTNNAL1Q9UBT7 734 aa13.64□□□□□ -0.23
LIMS1-204ENST00000409441 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.64□□□□□ -0.23
LIMS1-204ENST00000409441 TICRRQ7Z2Z1 1910 aa13.63□□□□□ -0.23
LIMS1-204ENST00000409441 DOCK4Q8N1I0 1966 aa13.63□□□□□ -0.23
LIMS1-204ENST00000409441 CBX4O00257 560 aa13.63□□□□□ -0.23
LIMS1-204ENST00000409441 BRAFP15056 766 aa13.63□□□□□ -0.23
LIMS1-204ENST00000409441 POLR2EP19388 210 aaKnown RBP13.63□□□□□ -0.23
LIMS1-204ENST00000409441 SLC18A1P54219 525 aa13.63□□□□□ -0.23
LIMS1-204ENST00000409441 SERINC3Q13530 473 aa13.63□□□□□ -0.23
LIMS1-204ENST00000409441 FASTKD3Q14CZ7 662 aaKnown RBP13.63□□□□□ -0.23
LIMS1-204ENST00000409441 ANKRD22Q5VYY1 191 aa13.63□□□□□ -0.23
LIMS1-204ENST00000409441 MBLAC2Q68D91 279 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms