RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 ZNF621Q6ZSS3 439 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 UNC93AQ86WB7 457 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 ELMO3Q96BJ8 720 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 SPATC1LQ9H0A9 340 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 ATXN3LQ9H3M9 355 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 RAP2CQ9Y3L5 183 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 BCLAF3A2AJT9 711 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 ABLIM1O14639 778 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 BMP10O95393 424 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 URODP06132 367 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 DPEP1P16444 411 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 CCNA2P20248 432 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 PSMB4P28070 264 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 CDC25CP30307 473 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 MAPK10P53779 464 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 EPHB3P54753 998 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 STX4Q12846 297 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 PERM1Q5SV97 790 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 TXNDC11Q6PKC3 985 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 ZNF438Q7Z4V0 828 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 VN1R5Q7Z5H4 357 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 PHF13Q86YI8 300 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 NKAPQ8N5F7 415 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 POC5Q8NA72 575 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 PROX1Q92786 737 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 DNAJC19Q96DA6 116 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 FAM163AQ96GL9 167 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 ZBTB45Q96K62 511 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 EHD3Q9NZN3 535 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 ASTN1O14525 1302 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 RNASEH1O60930 286 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 GTF2BQ00403 316 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 SPIRE1Q08AE8 756 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 ERICH5Q6P6B1 374 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 KBTBD2Q8IY47 623 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 RDH11Q8TC12 318 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 POP5Q969H6 163 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 RNF157Q96PX1 679 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 TBCDQ9BTW9 1192 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 POLR1EQ9GZS1 481 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 PNPLA3Q9NST1 481 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 KANSL3Q9P2N6 904 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 GSTK1Q9Y2Q3 226 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 OPLAHO14841 1288 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 FGF10O15520 208 aaPredicted RBP10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 EDF1O60869 148 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 PTPN3P26045 913 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 IL12AP29459 219 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 RHAGQ02094 409 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 LLGL2Q6P1M3 1020 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 UNC5AQ6ZN44 842 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 SYT12Q8IV01 421 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 IQCKQ8N0W5 287 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 WDR48Q8TAF3 677 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 HASPINQ8TF76 798 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 MED8Q96G25 268 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 OSBPL11Q9BXB4 747 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 FAM126AQ9BYI3 521 aaPredicted RBP10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 CATSPERZQ9NTU4 200 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 CRNNQ9UBG3 495 aaPredicted RBP10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 CLUHO75153 1309 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 APOL3O95236 402 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 GLRA2P23416 452 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 STAT5AP42229 794 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 MAPKAPK2P49137 400 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 IST1P53990 364 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 FCGRTP55899 365 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 SRP54P61011 504 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 OR52K1Q8NGK4 314 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 FBXO30Q8TB52 745 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 LENG9Q96B70 501 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 RHOBTB2Q9BYZ6 727 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 TKTL2Q9H0I9 626 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 ZMYM5Q9UJ78 669 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 TIMM13Q9Y5L4 95 aaPredicted RBP10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 SNCAIPQ9Y6H5 919 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 ALOX15BO15296 676 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 PEX14O75381 377 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 MSR1P21757 451 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 NOS3P29474 1203 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 CHKAP35790 457 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 DLG4P78352 724 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 FMO1Q01740 532 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 DDR1Q08345 913 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 DGCR6Q14129 220 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 BOP1Q14137 746 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 MACC1Q6ZN28 852 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 TRABD2AQ86V40 505 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 ULK2Q8IYT8 1036 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 SERAC1Q96JX3 654 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 HSFY1Q96LI6 401 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 EBNA1BP2Q99848 306 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 VPS51Q9UID3 782 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 SSNA1O43805 119 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 FMO4P31512 558 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 SLC25A24Q6NUK1 477 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 KIAA0408Q6ZU52 694 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 CACTIN-AS1Q8N1I8 211 aa10.36□□□□□ -0.75
LIMCH1-203ENST00000396595 TMEM86AQ8N2M4 240 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms