RNA–Protein interactions for RNA: ENST00000395969.6

VPS41-203, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5 BASIC

Gene VPS41, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-203ENST00000395969 C5orf67F2Z3F1 127 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 I6L893 689 aaPredicted RBP5.45□□□□□ -1.54
VPS41-203ENST00000395969 BEST1O76090 585 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 CD19P15391 556 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 HSD3B2P26439 372 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 SERPINB6P35237 376 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 THPOP40225 353 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 NPY2RP49146 381 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 GALK1P51570 392 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 TKTL1P51854 596 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 SPIDRQ14159 915 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 PDK3Q15120 406 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 HIF1AQ16665 826 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 ARL13BQ3SXY8 428 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 ANKRD20A4Q4UJ75 823 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 TIGD7Q6NT04 549 aaPredicted RBP5.45□□□□□ -1.54
VPS41-203ENST00000395969 KLHL35Q6PF15 583 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 LVRNQ6Q4G3 990 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 DHDDSQ86SQ9 333 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 DDX53Q86TM3 631 aaKnown RBP5.45□□□□□ -1.54
VPS41-203ENST00000395969 ULK2Q8IYT8 1036 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 TFB1MQ8WVM0 346 aaKnown RBP5.45□□□□□ -1.54
VPS41-203ENST00000395969 C1orf54Q8WWF1 131 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 CLP1Q92989 425 aaKnown RBP5.45□□□□□ -1.54
VPS41-203ENST00000395969 BTBD9Q96Q07 612 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 TRIM55Q9BYV6 548 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 C1orf21Q9H246 121 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 VPS11Q9H270 941 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 FBXO6Q9NRD1 293 aaPredicted RBP5.45□□□□□ -1.54
VPS41-203ENST00000395969 WBP1LQ9NX94 342 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 NSMCE4AQ9NXX6 385 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 DNMT3BQ9UBC3 853 aaKnown RBP5.45□□□□□ -1.54
VPS41-203ENST00000395969 ASIC3Q9UHC3 531 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 SLC7A8Q9UHI5 535 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 ZNHIT2Q9UHR6 403 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 DOLKQ9UPQ8 538 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 TMEM98Q9Y2Y6 226 aa5.45□□□□□ -1.54
VPS41-203ENST00000395969 EXOC1LA0A1B0GW35 172 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 TRIM43BA6NCK2 446 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 TMEM247A6NEH6 219 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 PRSS47A8MTI9 375 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 CASQ2O14958 399 aaPredicted RBP5.44□□□□□ -1.54
VPS41-203ENST00000395969 PEX1O43933 1283 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 USP1O94782 785 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 DDHD2O94830 711 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 AP2A1O95782 977 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 PGK1P00558 417 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 CD48P09326 243 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 CA4P22748 312 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 NFKBIAP25963 317 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 HOXA9P31269 272 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 HOXD12P35452 270 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 SLC26A3P40879 764 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 ETV4P43268 484 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 CSNK1DP48730 415 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 VEGFBP49765 207 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 PSMD7P51665 324 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 CCR3P51677 355 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 ARFIP2P53365 341 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 YBEYP58557 167 aaPredicted RBP5.44□□□□□ -1.54
VPS41-203ENST00000395969 RACK1P63244 317 aaKnown RBP5.44□□□□□ -1.54
VPS41-203ENST00000395969 TSPY1Q01534 308 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 NSUN2Q08J23 767 aaKnown RBP eCLIP5.44□□□□□ -1.54
VPS41-203ENST00000395969 DLG1Q12959 904 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 ATP13A4Q4VNC1 1196 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 SLC44A4Q53GD3 710 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 SPANXN3Q5MJ09 141 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 OVOS1Q6IE37 1185 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 OR6B2Q6IFH4 312 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 FBXL19Q6PCT2 694 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 DHRS4L2Q6PKH6 230 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 SCARA5Q6ZMJ2 495 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 LRRTM3Q86VH5 581 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 RASSF3Q86WH2 238 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 ARHGAP12Q8IWW6 846 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 UNC45BQ8IWX7 931 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 DEFB106AQ8N104 65 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 MARVELD2Q8N4S9 558 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 ZFP28Q8NHY6 868 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 UBA3Q8TBC4 463 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 CD99L2Q8TCZ2 262 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 LRRN4Q8WUT4 740 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 PLD4Q96BZ4 506 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 SRPK1Q96SB4 655 aaKnown RBP5.44□□□□□ -1.54
VPS41-203ENST00000395969 RBM15Q96T37 977 aaKnown RBP eCLIP5.44□□□□□ -1.54
VPS41-203ENST00000395969 KIFC1Q9BW19 673 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 TMEM120AQ9BXJ8 343 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 MAK16Q9BXY0 300 aaKnown RBP5.44□□□□□ -1.54
VPS41-203ENST00000395969 STN1Q9H668 368 aaKnown RBP5.44□□□□□ -1.54
VPS41-203ENST00000395969 PDFQ9HBH1 243 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 S100A14Q9HCY8 104 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 PIGVQ9NUD9 493 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 PSMC3IPQ9P2W1 217 aaPredicted RBP5.44□□□□□ -1.54
VPS41-203ENST00000395969 DCTN4Q9UJW0 460 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 RBMX2Q9Y388 322 aaKnown RBP5.44□□□□□ -1.54
VPS41-203ENST00000395969 TMED5Q9Y3A6 229 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 FAM237BA0A1B0GVD1 139 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 MYBPHLA2RUH7 354 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 NRP1O14786 923 aa5.44□□□□□ -1.54
VPS41-203ENST00000395969 DENRO43583 198 aaKnown RBP5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms