RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 TXLNGQ9NUQ3 528 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 CORO1CQ9ULV4 474 aaPredicted RBP10.45□□□□□ -0.74
COL6A3-205ENST00000392004 ACTL7AQ9Y615 435 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 BRCA2P51587 3418 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 WASH3PC4AMC7 463 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 J3KR12 359 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 APOC4-APOC2K7ER74 178 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 SMIM24O75264 130 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 APOC2P02655 101 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 ADH5P11766 374 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 SNRPD1P62314 119 aaKnown RBP10.44□□□□□ -0.74
COL6A3-205ENST00000392004 GRSF1Q12849 480 aaKnown RBP eCLIP10.44□□□□□ -0.74
COL6A3-205ENST00000392004 ZRSR2Q15696 482 aaKnown RBP10.44□□□□□ -0.74
COL6A3-205ENST00000392004 SYTL3Q4VX76 610 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 BRMS1LQ5PSV4 323 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 CAMK1DQ8IU85 385 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 CELF5Q8N6W0 485 aaKnown RBP10.44□□□□□ -0.74
COL6A3-205ENST00000392004 SEC14L1Q92503 715 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 RILPQ96NA2 401 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 SMC6Q96SB8 1091 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 SPATA16Q9BXB7 569 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 DNMT3BQ9UBC3 853 aaKnown RBP10.44□□□□□ -0.74
COL6A3-205ENST00000392004 CIDEBQ9UHD4 219 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 FBXW11Q9UKB1 542 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 DNTTP04053 509 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 SERPINA4P29622 427 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 SSTR1P30872 391 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 GLRBP48167 497 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 THOP1P52888 689 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 OLIG2Q13516 323 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 BOP1Q14137 746 aaKnown RBP10.44□□□□□ -0.74
COL6A3-205ENST00000392004 DPYSL3Q14195 570 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 USP10Q14694 798 aaKnown RBP10.44□□□□□ -0.74
COL6A3-205ENST00000392004 HSP90AA5PQ58FG0 334 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 ANKRD20A2Q5SQ80 823 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 ANKRD20A1Q5TYW2 823 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 ANKRD20A3Q5VUR7 823 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 ALKAL1Q6UXT8 129 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 TEX9Q8N6V9 391 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 SAMD11Q96NU1 681 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 TRAIPQ9BWF2 469 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 SLC39A8Q9C0K1 460 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 IARS2Q9NSE4 1012 aaKnown RBP10.44□□□□□ -0.74
COL6A3-205ENST00000392004 ARHGEF38Q9NXL2 777 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 CD207Q9UJ71 328 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 SCML2Q9UQR0 700 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 NCKAP1Q9Y2A7 1128 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 BACE2Q9Y5Z0 518 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 CEP250Q9BV73 2442 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 hCG_1818297A0A087WSY0 165 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 CFAP69A5D8W1 941 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 EIF4E1BA6NMX2 242 aaKnown RBP10.44□□□□□ -0.74
COL6A3-205ENST00000392004 MTSS1O43312 755 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 FAM189A1O60320 539 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 CLASP2O75122 1294 aaKnown RBP10.44□□□□□ -0.74
COL6A3-205ENST00000392004 CXCL10P02778 98 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 ARSAP15289 507 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 MZF1P28698 734 aaPredicted RBP10.44□□□□□ -0.74
COL6A3-205ENST00000392004 CHRNA4P43681 627 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 GEMP55040 296 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 TMEM31Q5JXX7 168 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 GLT6D1Q7Z4J2 308 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 PLD5Q8N7P1 536 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 ZNF513Q8N8E2 541 aaPredicted RBP10.44□□□□□ -0.74
COL6A3-205ENST00000392004 SLC43A3Q8NBI5 491 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 FBXO36Q8NEA4 188 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 STK32AQ8WU08 396 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 C2orf15Q8WU43 125 aaKnown RBP10.44□□□□□ -0.74
COL6A3-205ENST00000392004 ELMO2Q96JJ3 720 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 TSC22D3Q99576 134 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 TPSD1Q9BZJ3 242 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 HEBP1Q9NRV9 189 aa10.44□□□□□ -0.74
COL6A3-205ENST00000392004 MYO18AQ92614 2054 aaKnown RBP10.43□□□□□ -0.74
COL6A3-205ENST00000392004 TMEM120BA0PK00 339 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 PPARGP37231 505 aaPredicted RBP10.43□□□□□ -0.74
COL6A3-205ENST00000392004 POU5F1Q01860 360 aaKnown RBP10.43□□□□□ -0.74
COL6A3-205ENST00000392004 GAD2Q05329 585 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 GTF2H3Q13889 308 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 KATNAL2Q8IYT4 538 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 ZNF483Q8TF39 744 aaPredicted RBP10.43□□□□□ -0.74
COL6A3-205ENST00000392004 ADGRE3Q9BY15 652 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 SHCBP1LQ9BZQ2 653 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 ROPN1BQ9BZX4 212 aaPredicted RBP10.43□□□□□ -0.74
COL6A3-205ENST00000392004 ROPN1Q9HAT0 212 aaPredicted RBP10.43□□□□□ -0.74
COL6A3-205ENST00000392004 TMEM30AQ9NV96 361 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 K7ERQ8 282 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 KRT16P08779 473 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 PABPC1P11940 636 aaKnown RBP10.43□□□□□ -0.74
COL6A3-205ENST00000392004 ALDH3A1P30838 453 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 MTHFRP42898 656 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 MAGEA4P43358 317 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 PGFP49763 221 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 DRG2P55039 364 aaKnown RBP10.43□□□□□ -0.74
COL6A3-205ENST00000392004 BMPR2Q13873 1038 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 PRAMEF14Q5SWL7 426 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 MBLAC2Q68D91 279 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 PAQR9Q6ZVX9 377 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 LDB1Q86U70 411 aaPredicted RBP10.43□□□□□ -0.74
COL6A3-205ENST00000392004 TRAPPC5Q8IUR0 188 aa10.43□□□□□ -0.74
COL6A3-205ENST00000392004 PRELID2Q8N945 189 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms