RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 A0A096LPK6 155 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 CBX4O00257 560 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 RSL1D1O76021 490 aaKnown RBP9.39□□□□□ -0.91
VPS13A-203ENST00000360280 DGKAP23743 735 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 SPP2Q13103 211 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 CRTC3Q6UUV7 619 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 CHRDL2Q6WN34 429 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 SPOCD1Q6ZMY3 1216 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 MRPS31Q92665 395 aaKnown RBP9.39□□□□□ -0.91
VPS13A-203ENST00000360280 FBXO44Q9H4M3 255 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 SCNN1BP51168 640 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 BMPR2Q13873 1038 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 XKR8Q9H6D3 395 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 PIM2Q9P1W9 311 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 AASSQ9UDR5 926 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 GPN3Q9UHW5 284 aaPredicted RBP9.39□□□□□ -0.91
VPS13A-203ENST00000360280 MSH4O15457 936 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 PIK3R6Q5UE93 754 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 PTCHD4Q6ZW05 846 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 DNAJA4Q8WW22 397 aaPredicted RBP9.39□□□□□ -0.91
VPS13A-203ENST00000360280 SNAPC5O75971 98 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 CTSHP09668 335 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 SLC6A2P23975 617 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 MAGEA12P43365 314 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 CBWD6Q4V339 395 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 SLC47A1Q96FL8 570 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 ARL15Q9NXU5 204 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 DHRS12A0PJE2 317 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 PTPN5P54829 565 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 SETMARQ53H47 684 aaPredicted RBP9.39□□□□□ -0.91
VPS13A-203ENST00000360280 PHF12Q96QT6 1004 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 FNDC11Q9BVV2 318 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 SUCOQ9UBS9 1254 aaKnown RBP9.39□□□□□ -0.91
VPS13A-203ENST00000360280 HOXA2O43364 376 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 PROSCO94903 275 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 STAG3L1P0CL83 205 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 ZNF844Q08AG5 666 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 MIB1Q86YT6 1006 aa9.39□□□□□ -0.91
VPS13A-203ENST00000360280 EIF1ADQ8N9N8 165 aaKnown RBP9.39□□□□□ -0.91
VPS13A-203ENST00000360280 PCDH8O95206 1070 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 APOL3O95236 402 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 PLEKP08567 350 aaPredicted RBP9.38□□□□□ -0.91
VPS13A-203ENST00000360280 CDK9P50750 372 aaKnown RBP9.38□□□□□ -0.91
VPS13A-203ENST00000360280 ARCQ7LC44 396 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 C12orf66Q96MD2 445 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 COLEC11Q9BWP8 271 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 AGPAT3Q9NRZ7 376 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 HBP1O60381 514 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 NADKO95544 446 aaPredicted RBP9.38□□□□□ -0.91
VPS13A-203ENST00000360280 ACO1P21399 889 aaKnown RBP9.38□□□□□ -0.91
VPS13A-203ENST00000360280 USP45Q70EL2 814 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 STAG3L4Q8TBR4 150 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 TBCBQ99426 244 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 FAIM2Q9BWQ8 316 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 TRPV5Q9NQA5 729 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 ANKDD1BA6NHY2 528 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 ECHS1P30084 290 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 SGCGQ13326 291 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 TEFMQ96QE5 360 aaKnown RBP9.38□□□□□ -0.91
VPS13A-203ENST00000360280 MND1Q9BWT6 205 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 OGDHLQ9ULD0 1010 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 WDR27A2RRH5 827 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 C19orf81C9J6K1 198 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 PSME3P61289 254 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 GPER1Q99527 375 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 MEMO1Q9Y316 297 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 URADA6NGE7 173 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 MIIPQ5JXC2 388 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 SRBD1Q8N5C6 995 aaKnown RBP9.38□□□□□ -0.91
VPS13A-203ENST00000360280 ZNF557Q8N988 423 aaPredicted RBP9.38□□□□□ -0.91
VPS13A-203ENST00000360280 RDH11Q8TC12 318 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 HTR3CQ8WXA8 447 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 ATL1Q8WXF7 558 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 CHD2O14647 1828 aaKnown RBP9.38□□□□□ -0.91
VPS13A-203ENST00000360280 MAGEC1O60732 1142 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 GPAT3Q53EU6 434 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 NEDD1Q8NHV4 660 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 OR10H3O60404 316 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 MAP3K6O95382 1288 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 LSM3P62310 102 aaKnown RBP9.38□□□□□ -0.91
VPS13A-203ENST00000360280 ADAM17P78536 824 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 TCEAL6Q6IPX3 200 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 SMURF2Q9HAU4 748 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 SAMHD1Q9Y3Z3 626 aaKnown RBP9.38□□□□□ -0.91
VPS13A-203ENST00000360280 MPZL2O60487 215 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 SERPINB7O75635 380 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 CSH1P0DML2 217 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 CSH2P0DML3 217 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 TAS2R41P59536 307 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 WDR59Q6PJI9 974 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 SLC47A2Q86VL8 602 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 PGM2Q96G03 612 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 GMCL1Q96IK5 515 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 APOL2Q9BQE5 337 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 CBWD1Q9BRT8 395 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 LMAN2LQ9H0V9 348 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 PLEKHA1Q9HB21 404 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 SNRPB2P08579 225 aaKnown RBP9.38□□□□□ -0.91
VPS13A-203ENST00000360280 CLUP10909 449 aa9.38□□□□□ -0.91
VPS13A-203ENST00000360280 SPESP1Q6UW49 350 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms