RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 PHC2Q8IXK0 858 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 FBXO39Q8N4B4 442 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 LRRC4BQ9NT99 713 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 FNDC3AQ9Y2H6 1198 aaKnown RBP12.72□□□□□ -0.37
COL6A3-203ENST00000353578 ALG5Q9Y673 324 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 GNG14A0A1W2PPG7 69 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 PPEF2O14830 753 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 TCEA3O75764 348 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 PTTG1O95997 202 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 TDRPQ86YL5 185 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 RDH12Q96NR8 316 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 IDH2P48735 452 aaKnown RBP12.72□□□□□ -0.37
COL6A3-203ENST00000353578 AP1S1P61966 158 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 ZNF572Q7Z3I7 529 aaPredicted RBP12.72□□□□□ -0.37
COL6A3-203ENST00000353578 LRRC71Q8N4P6 559 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 RPRD1AQ96P16 312 aaPredicted RBP12.72□□□□□ -0.37
COL6A3-203ENST00000353578 CPNE5Q9HCH3 593 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 RDH8Q9NYR8 311 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 SNX8Q9Y5X2 465 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 DLC1Q96QB1 1528 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 PSMD11O00231 422 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 PRG2P13727 222 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 ZMYND11Q15326 602 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 CA9Q16790 459 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 FAM76BQ5HYJ3 339 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 EDARQ9UNE0 448 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 PRKCBP05771 671 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 CBLBQ13191 982 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 PAGE2BQ5JRK9 111 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 CPA5Q8WXQ8 436 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 CRELD1Q96HD1 420 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 ADGRE3Q9BY15 652 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 C1orf21Q9H246 121 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 PREBQ9HCU5 417 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 CDC16Q13042 620 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 BAIAP2L2Q6UXY1 529 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 CYP2R1Q6VVX0 501 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 ZSCAN18Q8TBC5 510 aaPredicted RBP12.72□□□□□ -0.37
COL6A3-203ENST00000353578 KLHL11Q9NVR0 708 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 GDI2P50395 445 aaKnown RBP12.72□□□□□ -0.37
COL6A3-203ENST00000353578 BCAMP50895 628 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 ARFIP1P53367 373 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 CCNIQ14094 377 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 DLG2Q15700 870 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 PGAP1Q75T13 922 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 KCNMB4Q86W47 210 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 CLCC1Q96S66 551 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 MMP27Q9H306 513 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 IGSF1Q8N6C5 1336 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 RPS2P15880 293 aaKnown RBP12.72□□□□□ -0.37
COL6A3-203ENST00000353578 YWHAZP63104 245 aaKnown RBP12.72□□□□□ -0.37
COL6A3-203ENST00000353578 CUL2Q13617 745 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 ADGRE1Q14246 886 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 ZRANB3Q5FWF4 1079 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 TMC7Q7Z402 723 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 UNC5BQ8IZJ1 945 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 TBC1D16Q8TBP0 767 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 FAM84AQ96KN4 292 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 FAM86C1Q9NVL1 165 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 NINJ2Q9NZG7 142 aa12.72□□□□□ -0.37
COL6A3-203ENST00000353578 M0R233 179 aa12.71□□□□□ -0.37
COL6A3-203ENST00000353578 NDUFS2O75306 463 aa12.71□□□□□ -0.37
COL6A3-203ENST00000353578 RGS1Q08116 209 aa12.71□□□□□ -0.37
COL6A3-203ENST00000353578 USP4Q13107 963 aa12.71□□□□□ -0.37
COL6A3-203ENST00000353578 CLCA4Q14CN2 919 aa12.71□□□□□ -0.37
COL6A3-203ENST00000353578 QSOX2Q6ZRP7 698 aa12.71□□□□□ -0.37
COL6A3-203ENST00000353578 R3HCC1LQ7Z5L2 792 aaKnown RBP12.71□□□□□ -0.37
COL6A3-203ENST00000353578 TIGD4Q8IY51 512 aa12.71□□□□□ -0.37
COL6A3-203ENST00000353578 TCTEX1D2Q8WW35 142 aa12.71□□□□□ -0.37
COL6A3-203ENST00000353578 PIGWQ7Z7B1 504 aa12.71□□□□□ -0.37
COL6A3-203ENST00000353578 ZNF655Q8N720 491 aaPredicted RBP12.71□□□□□ -0.37
COL6A3-203ENST00000353578 POU5F2Q8N7G0 328 aa12.71□□□□□ -0.37
COL6A3-203ENST00000353578 GLP2RO95838 553 aa12.71□□□□□ -0.37
COL6A3-203ENST00000353578 GCP02774 474 aa12.71□□□□□ -0.37
COL6A3-203ENST00000353578 RARAP10276 462 aa12.71□□□□□ -0.37
COL6A3-203ENST00000353578 PRKCIP41743 596 aa12.71□□□□□ -0.37
COL6A3-203ENST00000353578 C11orf24Q96F05 449 aaPredicted RBP12.71□□□□□ -0.37
COL6A3-203ENST00000353578 ZNF219Q9P2Y4 722 aaPredicted RBP12.71□□□□□ -0.37
COL6A3-203ENST00000353578 CYP3A7-CYP3A51PA0A087WV96 503 aa12.71□□□□□ -0.37
COL6A3-203ENST00000353578 CYP3A7P24462 503 aa12.71□□□□□ -0.37
COL6A3-203ENST00000353578 TMEM132DQ14C87 1099 aa12.71□□□□□ -0.37
COL6A3-203ENST00000353578 FAM153CQ494X1 144 aa12.71□□□□□ -0.37
COL6A3-203ENST00000353578 PGBD2Q6P3X8 592 aa12.71□□□□□ -0.37
COL6A3-203ENST00000353578 SPPL2AQ8TCT8 520 aa12.71□□□□□ -0.37
COL6A3-203ENST00000353578 C12orf43Q96C57 262 aaKnown RBP12.71□□□□□ -0.37
COL6A3-203ENST00000353578 CCDC167Q9P0B6 97 aa12.71□□□□□ -0.37
COL6A3-203ENST00000353578 ZW10O43264 779 aa12.71□□□□□ -0.37
COL6A3-203ENST00000353578 PON3Q15166 354 aa12.71□□□□□ -0.37
COL6A3-203ENST00000353578 DNAJA4Q8WW22 397 aaPredicted RBP12.71□□□□□ -0.37
COL6A3-203ENST00000353578 POLR3BQ9NW08 1133 aaPredicted RBP12.71□□□□□ -0.37
COL6A3-203ENST00000353578 TAS2R13Q9NYV9 303 aa12.71□□□□□ -0.37
COL6A3-203ENST00000353578 SERPINA3P01011 423 aa12.71□□□□□ -0.38
COL6A3-203ENST00000353578 EPCAMP16422 314 aa12.71□□□□□ -0.38
COL6A3-203ENST00000353578 CD79BP40259 229 aa12.71□□□□□ -0.38
COL6A3-203ENST00000353578 ETV1P50549 477 aa12.71□□□□□ -0.38
COL6A3-203ENST00000353578 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.71□□□□□ -0.38
COL6A3-203ENST00000353578 CASKO14936 926 aa12.71□□□□□ -0.38
COL6A3-203ENST00000353578 RPS9P46781 194 aaKnown RBP12.71□□□□□ -0.38
COL6A3-203ENST00000353578 ARHGAP15Q53QZ3 475 aa12.71□□□□□ -0.38
COL6A3-203ENST00000353578 MSANTD3Q96H12 275 aa12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms