RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 CCDC124Q96CT7 223 aaKnown RBP18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 ELMO2Q96JJ3 720 aa18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 ANKRD27Q96NW4 1050 aa18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 ILKAPQ9H0C8 392 aaPredicted RBP18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 NT5MQ9NPB1 228 aa18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 GEMIN8Q9NWZ8 242 aaKnown RBP18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 NSMCE4AQ9NXX6 385 aa18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 XPR1Q9UBH6 696 aa18.59■□□□□ 0.57
SHKBP1-201ENST00000291842 MYO16Q9Y6X6 1858 aa18.58■□□□□ 0.57
SHKBP1-201ENST00000291842 EPHA3P29320 983 aa18.58■□□□□ 0.56
SHKBP1-201ENST00000291842 SERPINB5P36952 375 aa18.58■□□□□ 0.56
SHKBP1-201ENST00000291842 WNT3AP56704 352 aa18.58■□□□□ 0.56
SHKBP1-201ENST00000291842 INHBEP58166 350 aa18.58■□□□□ 0.56
SHKBP1-201ENST00000291842 EFEMP1Q12805 493 aa18.58■□□□□ 0.56
SHKBP1-201ENST00000291842 TRIM71Q2Q1W2 868 aaKnown RBP18.58■□□□□ 0.56
SHKBP1-201ENST00000291842 LIPMQ5VYY2 423 aa18.58■□□□□ 0.56
SHKBP1-201ENST00000291842 CCSAPQ6IQ19 270 aaPredicted RBP18.58■□□□□ 0.56
SHKBP1-201ENST00000291842 ANO7Q6IWH7 933 aa18.58■□□□□ 0.56
SHKBP1-201ENST00000291842 GLB1LQ6UWU2 654 aa18.58■□□□□ 0.56
SHKBP1-201ENST00000291842 KLHDC9Q8NEP7 349 aa18.58■□□□□ 0.56
SHKBP1-201ENST00000291842 MICAL1Q8TDZ2 1067 aa18.58■□□□□ 0.56
SHKBP1-201ENST00000291842 SERPINB11Q96P15 392 aa18.58■□□□□ 0.56
SHKBP1-201ENST00000291842 ENTPD7Q9NQZ7 604 aa18.58■□□□□ 0.56
SHKBP1-201ENST00000291842 GMIPQ9P107 970 aa18.58■□□□□ 0.56
SHKBP1-201ENST00000291842 ACOT9Q9Y305 439 aa18.58■□□□□ 0.56
SHKBP1-201ENST00000291842 FAM155AB1AL88 458 aaPredicted RBP18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 F8W8V4 182 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 HAPLN1P10915 354 aaPredicted RBP18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 HADHAP40939 763 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 ARPP19P56211 112 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 ALFQ53S48 1182 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 ZNF789Q5FWF6 425 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 LRRC8EQ6NSJ5 796 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 TIGD7Q6NT04 549 aaPredicted RBP18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 RANBP10Q6VN20 620 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 MIB1Q86YT6 1006 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 ATAD1Q8NBU5 361 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 MIEF2Q96C03 454 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 PABPC5Q96DU9 382 aaKnown RBP18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 HMCESQ96FZ2 354 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 NDNQ99608 321 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 NUF2Q9BZD4 464 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 TCF7L2Q9NQB0 619 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 ZDHHC2Q9UIJ5 367 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 ANKRD6Q9Y2G4 727 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 DLX3O60479 287 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 SKAP2O75563 359 aaPredicted RBP18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 HMBSP08397 361 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 ANPEPP15144 967 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 STMN1P16949 149 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 DNAJB2P25686 324 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 TAS2R39P59534 338 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 RAB10P61026 200 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 PSMD5Q16401 504 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 AFMIDQ63HM1 303 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 CNSTQ6PJW8 725 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 POTEHQ6S545 545 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 MYLK4Q86YV6 388 aaPredicted RBP18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 DEFB107AQ8IZN7 70 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 CCNYL1Q8N7R7 359 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 CMTM5Q96DZ9 223 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 BATF3Q9NR55 127 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 PPM1HQ9ULR3 514 aa18.57■□□□□ 0.56
SHKBP1-201ENST00000291842 CCL22O00626 93 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 MYL4P12829 197 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 ACADSP16219 412 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 GCKP35557 465 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 SLC10A7Q0GE19 358 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 UGP2Q16851 508 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 TMC7Q7Z402 723 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 RNF135Q8IUD6 432 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 CNTN4Q8IWV2 1026 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 KBTBD2Q8IY47 623 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 NUP93Q8N1F7 819 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 HIPK4Q8NE63 616 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 DRC3Q9H069 523 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 ZCWPW1Q9H0M4 648 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 TREX1Q9NSU2 369 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 PATJQ8NI35 1801 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 CA12O43570 354 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 LUC7L3O95232 432 aaKnown RBP18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 JUNP05412 331 aaKnown RBP18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 APOA4P06727 396 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 SKIP12755 728 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 COX4I1P13073 169 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 ITGAXP20702 1163 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 CD86P42081 329 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 RPL14P50914 215 aaKnown RBP18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 TBX4P57082 545 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 KLF10Q13118 480 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 BLMHQ13867 455 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 MBTPS1Q14703 1052 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 RBM20Q5T481 1227 aaKnown RBP18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 MON1AQ86VX9 555 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 CIR1Q86X95 450 aaPredicted RBP18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 STYXQ8WUJ0 223 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 PYDC1Q8WXC3 89 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 LENG8Q96PV6 779 aaPredicted RBP18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 ZNF212Q9UDV6 495 aa18.56■□□□□ 0.56
SHKBP1-201ENST00000291842 PACSIN3Q9UKS6 424 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms