RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 PEX11BO96011 259 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 HAPLN1P10915 354 aaPredicted RBP20.32■□□□□ 0.84
VPS53-201ENST00000291074 HTR7P34969 479 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 GRIA4P48058 902 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 WNT3AP56704 352 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 DLG1Q12959 904 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 RANBP10Q6VN20 620 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 HMCESQ96FZ2 354 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 SLC39A13Q96H72 371 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 C1orf21Q9H246 121 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 FAM96AQ9H5X1 160 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 NT5MQ9NPB1 228 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 ENTPD7Q9NQZ7 604 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 RNF186Q9NXI6 227 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 XPR1Q9UBH6 696 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 SCML2Q9UQR0 700 aa20.32■□□□□ 0.84
VPS53-201ENST00000291074 NEMP1O14524 444 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 CIB2O75838 187 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 SORBS2O94875 1100 aaKnown RBP20.31■□□□□ 0.84
VPS53-201ENST00000291074 OAZ2O95190 189 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 COPAP53621 1224 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 TBX4P57082 545 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 SLC34A1Q06495 639 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 MUM1Q2TAK8 710 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 TRAF7Q6Q0C0 670 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 NET1Q7Z628 596 aaPredicted RBP20.31■□□□□ 0.84
VPS53-201ENST00000291074 MON1AQ86VX9 555 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 MAB21L3Q8N8X9 362 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 PCSK9Q8NBP7 692 aaKnown RBP20.31■□□□□ 0.84
VPS53-201ENST00000291074 CFAP61Q8NHU2 1237 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 NXNL1Q96CM4 212 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 WDR55Q9H6Y2 383 aaPredicted RBP20.31■□□□□ 0.84
VPS53-201ENST00000291074 TREX1Q9NSU2 369 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 TLR6Q9Y2C9 796 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 ANKRD6Q9Y2G4 727 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 PAX3P23760 479 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 CST5P28325 142 aaPredicted RBP20.31■□□□□ 0.84
VPS53-201ENST00000291074 HADHAP40939 763 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 TM4SF4P48230 202 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 ACLYP53396 1101 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 NAGLUP54802 743 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 ITKQ08881 620 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 SLC10A7Q0GE19 358 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 SLC12A1Q13621 1099 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 IHHQ14623 411 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 MS4A13Q5J8X5 152 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 VARS2Q5ST30 1063 aaKnown RBP20.31■□□□□ 0.84
VPS53-201ENST00000291074 C1orf146Q5VVC0 180 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 LRRC8EQ6NSJ5 796 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 POTEHQ6S545 545 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 SLC24A5Q71RS6 500 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 TSNARE1Q96NA8 513 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 OSBPL1AQ9BXW6 950 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 CYP4F11Q9HBI6 524 aa20.31■□□□□ 0.84
VPS53-201ENST00000291074 ABT1Q9ULW3 272 aaKnown RBP20.31■□□□□ 0.84
VPS53-201ENST00000291074 NVLO15381 856 aaKnown RBP20.3■□□□□ 0.84
VPS53-201ENST00000291074 VHLP40337 213 aa20.3■□□□□ 0.84
VPS53-201ENST00000291074 ARPP19P56211 112 aa20.3■□□□□ 0.84
VPS53-201ENST00000291074 ZNF789Q5FWF6 425 aa20.3■□□□□ 0.84
VPS53-201ENST00000291074 LIPMQ5VYY2 423 aa20.3■□□□□ 0.84
VPS53-201ENST00000291074 KDELC1Q6UW63 502 aa20.3■□□□□ 0.84
VPS53-201ENST00000291074 LRRC74BQ6ZQY2 392 aa20.3■□□□□ 0.84
VPS53-201ENST00000291074 MIB1Q86YT6 1006 aa20.3■□□□□ 0.84
VPS53-201ENST00000291074 ZNF683Q8IZ20 524 aa20.3■□□□□ 0.84
VPS53-201ENST00000291074 DCP1BQ8IZD4 617 aaKnown RBP20.3■□□□□ 0.84
VPS53-201ENST00000291074 SREK1Q8WXA9 508 aaKnown RBP20.3■□□□□ 0.84
VPS53-201ENST00000291074 DNAJC9Q8WXX5 260 aa20.3■□□□□ 0.84
VPS53-201ENST00000291074 PABPC5Q96DU9 382 aaKnown RBP20.3■□□□□ 0.84
VPS53-201ENST00000291074 ELMO2Q96JJ3 720 aa20.3■□□□□ 0.84
VPS53-201ENST00000291074 OMDQ99983 421 aa20.3■□□□□ 0.84
VPS53-201ENST00000291074 STX18Q9P2W9 335 aaKnown RBP20.3■□□□□ 0.84
VPS53-201ENST00000291074 ACOT9Q9Y305 439 aa20.3■□□□□ 0.84
VPS53-201ENST00000291074 CASP8AP2Q9UKL3 1982 aa20.3■□□□□ 0.84
VPS53-201ENST00000291074 PIGNO95427 931 aa20.3■□□□□ 0.84
VPS53-201ENST00000291074 HMBSP08397 361 aa20.3■□□□□ 0.84
VPS53-201ENST00000291074 TAS2R39P59534 338 aa20.3■□□□□ 0.84
VPS53-201ENST00000291074 RAB10P61026 200 aa20.3■□□□□ 0.84
VPS53-201ENST00000291074 ARL13AQ5H913 290 aaPredicted RBP20.3■□□□□ 0.84
VPS53-201ENST00000291074 CIR1Q86X95 450 aaPredicted RBP20.3■□□□□ 0.84
VPS53-201ENST00000291074 ZNF354CQ86Y25 554 aa20.3■□□□□ 0.84
VPS53-201ENST00000291074 STYXQ8WUJ0 223 aa20.3■□□□□ 0.84
VPS53-201ENST00000291074 ZNF333Q96JL9 665 aa20.3■□□□□ 0.84
VPS53-201ENST00000291074 NDNQ99608 321 aa20.3■□□□□ 0.84
VPS53-201ENST00000291074 MYL4P12829 197 aa20.3■□□□□ 0.84
VPS53-201ENST00000291074 CD86P42081 329 aa20.3■□□□□ 0.84
VPS53-201ENST00000291074 UGP2Q16851 508 aa20.3■□□□□ 0.84
VPS53-201ENST00000291074 TRMT5Q32P41 509 aaKnown RBP20.3■□□□□ 0.84
VPS53-201ENST00000291074 RBM20Q5T481 1227 aaKnown RBP20.3■□□□□ 0.84
VPS53-201ENST00000291074 FRMD7Q6ZUT3 714 aa20.3■□□□□ 0.84
VPS53-201ENST00000291074 EFCAB3Q8N7B9 438 aa20.3■□□□□ 0.84
VPS53-201ENST00000291074 SGF29Q96ES7 293 aa20.3■□□□□ 0.84
VPS53-201ENST00000291074 ILKAPQ9H0C8 392 aaPredicted RBP20.3■□□□□ 0.84
VPS53-201ENST00000291074 G3BP2Q9UN86 482 aaKnown RBP20.3■□□□□ 0.84
VPS53-201ENST00000291074 TARM1B6A8C7 271 aa20.29■□□□□ 0.84
VPS53-201ENST00000291074 DLX3O60479 287 aa20.29■□□□□ 0.84
VPS53-201ENST00000291074 PDE5AO76074 875 aa20.29■□□□□ 0.84
VPS53-201ENST00000291074 STMN1P16949 149 aa20.29■□□□□ 0.84
VPS53-201ENST00000291074 ATP6V1C1P21283 382 aa20.29■□□□□ 0.84
VPS53-201ENST00000291074 EPHB1P54762 984 aa20.29■□□□□ 0.84
VPS53-201ENST00000291074 ACTR3P61158 418 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms