RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 EPOP01588 193 aa14.3□□□□□ -0.12
SS18-201ENST00000269137 CR2P20023 1033 aa14.3□□□□□ -0.12
SS18-201ENST00000269137 ATP5DP30049 168 aa14.3□□□□□ -0.12
SS18-201ENST00000269137 LMAN2Q12907 356 aa14.3□□□□□ -0.12
SS18-201ENST00000269137 FRG1Q14331 258 aaKnown RBP14.3□□□□□ -0.12
SS18-201ENST00000269137 TCEAL5Q5H9L2 206 aa14.3□□□□□ -0.12
SS18-201ENST00000269137 CERCAMQ5T4B2 595 aa14.3□□□□□ -0.12
SS18-201ENST00000269137 ANKRD54Q6NXT1 300 aa14.3□□□□□ -0.12
SS18-201ENST00000269137 ZNF449Q6P9G9 518 aa14.3□□□□□ -0.12
SS18-201ENST00000269137 TMEM135Q86UB9 458 aa14.3□□□□□ -0.12
SS18-201ENST00000269137 TMEM25Q86YD3 366 aa14.3□□□□□ -0.12
SS18-201ENST00000269137 NPAS3Q8IXF0 933 aa14.3□□□□□ -0.12
SS18-201ENST00000269137 ADGRG2Q8IZP9 1017 aa14.3□□□□□ -0.12
SS18-201ENST00000269137 TTC17Q96AE7 1141 aa14.3□□□□□ -0.12
SS18-201ENST00000269137 LINC00597Q9H2U6 94 aa14.3□□□□□ -0.12
SS18-201ENST00000269137 SPHK2Q9NRA0 654 aa14.3□□□□□ -0.12
SS18-201ENST00000269137 PLK2Q9NYY3 685 aa14.3□□□□□ -0.12
SS18-201ENST00000269137 GDE1Q9NZC3 331 aa14.3□□□□□ -0.12
SS18-201ENST00000269137 MARK1Q9P0L2 795 aa14.3□□□□□ -0.12
SS18-201ENST00000269137 VPS51Q9UID3 782 aa14.3□□□□□ -0.12
SS18-201ENST00000269137 CLEC4EQ9ULY5 219 aa14.3□□□□□ -0.12
SS18-201ENST00000269137 ACTL7AQ9Y615 435 aa14.3□□□□□ -0.12
SS18-201ENST00000269137 POC1B-GALNT4F8VUJ3 575 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 POLBP06746 335 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 HOXB8P17481 243 aaPredicted RBP14.29□□□□□ -0.12
SS18-201ENST00000269137 MAGOHP61326 146 aaKnown RBP14.29□□□□□ -0.12
SS18-201ENST00000269137 NSUN2Q08J23 767 aaKnown RBP eCLIP14.29□□□□□ -0.12
SS18-201ENST00000269137 NR1H3Q13133 447 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 CRYMQ14894 314 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 KBTBD12Q3ZCT8 623 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 SPANXN3Q5MJ09 141 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 RETSATQ6NUM9 610 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 SYCE2Q6PIF2 218 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 ADGRD1Q6QNK2 874 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 PTCD2Q8WV60 388 aaKnown RBP14.29□□□□□ -0.12
SS18-201ENST00000269137 SLC44A1Q8WWI5 657 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 FGF13Q92913 245 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 KIFC1Q9BW19 673 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 LMCD1Q9NZU5 365 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 PSMC3IPQ9P2W1 217 aaPredicted RBP14.29□□□□□ -0.12
SS18-201ENST00000269137 SOX13Q9UN79 622 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 MIA3Q5JRA6 1907 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 LOC285095A0A1B0GVY8 99 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 FAM159BA6NKW6 160 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 USP1O94782 785 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 TMCC1O94876 653 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 SERPINF2P08697 491 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 NR1D1P20393 614 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 MSH2P43246 934 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 NUMBP49757 651 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 SLC20A2Q08357 652 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 PLEKHG6Q3KR16 790 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 KDM7AQ6ZMT4 941 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 METTL3Q86U44 580 aaKnown RBP14.29□□□□□ -0.12
SS18-201ENST00000269137 APCDD1Q8J025 514 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 SMARCD2Q92925 531 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 FEM1CQ96JP0 617 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 ASB16Q96NS5 453 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 LRRC3BQ96PB8 259 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 PAFAH2Q99487 392 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 TRIM56Q9BRZ2 755 aaKnown RBP14.29□□□□□ -0.12
SS18-201ENST00000269137 BBS2Q9BXC9 721 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 TRPV4Q9HBA0 871 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 CTNNAL1Q9UBT7 734 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 ADAM21Q9UKJ8 722 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 RPS6KL1Q9Y6S9 549 aa14.29□□□□□ -0.12
SS18-201ENST00000269137 TNRC18O15417 2968 aaPredicted RBP14.29□□□□□ -0.12
SS18-201ENST00000269137 LINC01565O15544 149 aa14.28□□□□□ -0.12
SS18-201ENST00000269137 ATP9BO43861 1147 aa14.28□□□□□ -0.12
SS18-201ENST00000269137 TPH1P17752 444 aa14.28□□□□□ -0.12
SS18-201ENST00000269137 CD70P32970 193 aa14.28□□□□□ -0.12
SS18-201ENST00000269137 GYS2P54840 703 aa14.28□□□□□ -0.12
SS18-201ENST00000269137 ADAM15Q13444 863 aa14.28□□□□□ -0.12
SS18-201ENST00000269137 EFTUD2Q15029 972 aaKnown RBP eCLIP14.28□□□□□ -0.125e-13■■■■■ 88.9
SS18-201ENST00000269137 ANKRD20A4Q4UJ75 823 aa14.28□□□□□ -0.12
SS18-201ENST00000269137 RALGPS1Q5JS13 557 aa14.28□□□□□ -0.12
SS18-201ENST00000269137 FAM78AQ5JUQ0 283 aa14.28□□□□□ -0.12
SS18-201ENST00000269137 PCID2Q5JVF3 399 aa14.28□□□□□ -0.12
SS18-201ENST00000269137 LY6G5CQ5SRR4 150 aa14.28□□□□□ -0.12
SS18-201ENST00000269137 TRMT10BQ6PF06 316 aaKnown RBP14.28□□□□□ -0.12
SS18-201ENST00000269137 LINGO4Q6UY18 593 aa14.28□□□□□ -0.12
SS18-201ENST00000269137 LRRC6Q86X45 466 aa14.28□□□□□ -0.12
SS18-201ENST00000269137 CYP4X1Q8N118 509 aa14.28□□□□□ -0.12
SS18-201ENST00000269137 ARFGAP2Q8N6H7 521 aa14.28□□□□□ -0.12
SS18-201ENST00000269137 DCAKDQ8WVC6 231 aa14.28□□□□□ -0.12
SS18-201ENST00000269137 NUDCD1Q96RS6 583 aa14.28□□□□□ -0.12
SS18-201ENST00000269137 ZNF576Q9H609 170 aa14.28□□□□□ -0.12
SS18-201ENST00000269137 NOD2Q9HC29 1040 aa14.28□□□□□ -0.12
SS18-201ENST00000269137 MRM3Q9HC36 420 aaKnown RBP14.28□□□□□ -0.12
SS18-201ENST00000269137 OBP2AQ9NY56 170 aa14.28□□□□□ -0.12
SS18-201ENST00000269137 INTS6Q9UL03 887 aaKnown RBP14.28□□□□□ -0.12
SS18-201ENST00000269137 WNT6Q9Y6F9 365 aa14.28□□□□□ -0.12
SS18-201ENST00000269137 FAM169AQ9Y6X4 670 aa14.28□□□□□ -0.12
SS18-201ENST00000269137 NEDD8-MDP1E9PL57 170 aa14.27□□□□□ -0.12
SS18-201ENST00000269137 INSIG1O15503 277 aa14.27□□□□□ -0.12
SS18-201ENST00000269137 TYRP14679 529 aa14.27□□□□□ -0.12
SS18-201ENST00000269137 HLA-FP30511 346 aa14.27□□□□□ -0.12
SS18-201ENST00000269137 RGRP47804 291 aa14.27□□□□□ -0.12
SS18-201ENST00000269137 CDK18Q07002 472 aa14.27□□□□□ -0.12
SS18-201ENST00000269137 NAB1Q13506 487 aa14.27□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms