RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 UBE2OQ9C0C9 1292 aaKnown RBP18.96■□□□□ 0.63
CPSF3-201ENST00000238112 GNEQ9Y223 722 aaKnown RBP18.96■□□□□ 0.63
CPSF3-201ENST00000238112 TBC1D30Q9Y2I9 924 aa18.96■□□□□ 0.63
CPSF3-201ENST00000238112 SHROOM3Q8TF72 1996 aa18.96■□□□□ 0.63
CPSF3-201ENST00000238112 C15orf38-AP3S2A0A0A6YYH1 394 aa18.96■□□□□ 0.63
CPSF3-201ENST00000238112 TADA2AO75478 443 aa18.96■□□□□ 0.63
CPSF3-201ENST00000238112 CCNCP24863 283 aa18.96■□□□□ 0.63
CPSF3-201ENST00000238112 UGT2A3Q6UWM9 527 aa18.96■□□□□ 0.63
CPSF3-201ENST00000238112 ARHGAP36Q6ZRI8 547 aa18.96■□□□□ 0.63
CPSF3-201ENST00000238112 ARPINQ7Z6K5 226 aa18.96■□□□□ 0.63
CPSF3-201ENST00000238112 CEP97Q8IW35 865 aa18.96■□□□□ 0.63
CPSF3-201ENST00000238112 SPATA6LQ8N4H0 392 aa18.96■□□□□ 0.63
CPSF3-201ENST00000238112 ELMO2Q96JJ3 720 aa18.96■□□□□ 0.63
CPSF3-201ENST00000238112 FICDQ9BVA6 458 aa18.96■□□□□ 0.63
CPSF3-201ENST00000238112 RHOBTB2Q9BYZ6 727 aa18.96■□□□□ 0.63
CPSF3-201ENST00000238112 SIK2Q9H0K1 926 aa18.96■□□□□ 0.63
CPSF3-201ENST00000238112 MRPL46Q9H2W6 279 aaKnown RBP18.96■□□□□ 0.63
CPSF3-201ENST00000238112 NCKIPSDQ9NZQ3 722 aa18.96■□□□□ 0.63
CPSF3-201ENST00000238112 ZNF236Q9UL36 1845 aa18.96■□□□□ 0.63
CPSF3-201ENST00000238112 TRPC5OSA6NMA1 111 aa18.95■□□□□ 0.62
CPSF3-201ENST00000238112 PGK1P00558 417 aa18.95■□□□□ 0.62
CPSF3-201ENST00000238112 MYL3P08590 195 aa18.95■□□□□ 0.62
CPSF3-201ENST00000238112 ME2P23368 584 aa18.95■□□□□ 0.62
CPSF3-201ENST00000238112 CLCNKBP51801 687 aa18.95■□□□□ 0.62
CPSF3-201ENST00000238112 KPNA2P52292 529 aaKnown RBP18.95■□□□□ 0.62
CPSF3-201ENST00000238112 ESRP1Q6NXG1 681 aaKnown RBP18.95■□□□□ 0.62
CPSF3-201ENST00000238112 KLHDC8BQ8IXV7 354 aa18.95■□□□□ 0.62
CPSF3-201ENST00000238112 CATSPER1Q8NEC5 780 aa18.95■□□□□ 0.62
CPSF3-201ENST00000238112 BHLHE22Q8NFJ8 381 aaPredicted RBP18.95■□□□□ 0.62
CPSF3-201ENST00000238112 IRGQQ8WZA9 623 aa18.95■□□□□ 0.62
CPSF3-201ENST00000238112 FCRL5Q96RD9 977 aa18.95■□□□□ 0.62
CPSF3-201ENST00000238112 OMDQ99983 421 aa18.95■□□□□ 0.62
CPSF3-201ENST00000238112 FTHL17Q9BXU8 183 aa18.95■□□□□ 0.62
CPSF3-201ENST00000238112 DMAP1Q9NPF5 467 aaPredicted RBP18.95■□□□□ 0.62
CPSF3-201ENST00000238112 COPG1Q9Y678 874 aaKnown RBP18.95■□□□□ 0.62
CPSF3-201ENST00000238112 C17orf102A2RUQ5 167 aa18.95■□□□□ 0.62
CPSF3-201ENST00000238112 MEIS3P2A8K0S8 358 aa18.95■□□□□ 0.62
CPSF3-201ENST00000238112 NPHS1O60500 1241 aa18.95■□□□□ 0.62
CPSF3-201ENST00000238112 PABPC4LP0CB38 370 aaKnown RBP18.95■□□□□ 0.62
CPSF3-201ENST00000238112 PAMP19021 973 aa18.95■□□□□ 0.62
CPSF3-201ENST00000238112 PCSK1P29120 753 aa18.95■□□□□ 0.62
CPSF3-201ENST00000238112 MSX2P35548 267 aaPredicted RBP18.95■□□□□ 0.62
CPSF3-201ENST00000238112 SLC12A2P55011 1212 aa18.95■□□□□ 0.62
CPSF3-201ENST00000238112 CEACAM7Q14002 265 aa18.95■□□□□ 0.62
CPSF3-201ENST00000238112 ADGRE1Q14246 886 aa18.95■□□□□ 0.62
CPSF3-201ENST00000238112 SH2D4BQ5SQS7 431 aa18.95■□□□□ 0.62
CPSF3-201ENST00000238112 POTEHQ6S545 545 aa18.95■□□□□ 0.62
CPSF3-201ENST00000238112 TMEM126BQ8IUX1 230 aa18.95■□□□□ 0.62
CPSF3-201ENST00000238112 RNF148Q8N7C7 305 aa18.95■□□□□ 0.62
CPSF3-201ENST00000238112 MS4A4AQ96JQ5 239 aa18.95■□□□□ 0.62
CPSF3-201ENST00000238112 UNKQ9C0B0 810 aaKnown RBP18.95■□□□□ 0.62
CPSF3-201ENST00000238112 OSBPL2Q9H1P3 480 aa18.95■□□□□ 0.62
CPSF3-201ENST00000238112 GLOD4Q9HC38 313 aa18.95■□□□□ 0.62
CPSF3-201ENST00000238112 NUP205Q92621 2012 aa18.94■□□□□ 0.62
CPSF3-201ENST00000238112 DENRO43583 198 aaKnown RBP18.94■□□□□ 0.62
CPSF3-201ENST00000238112 THP07101 528 aa18.94■□□□□ 0.62
CPSF3-201ENST00000238112 EPHX2P34913 555 aa18.94■□□□□ 0.62
CPSF3-201ENST00000238112 SLC1A2P43004 574 aa18.94■□□□□ 0.62
CPSF3-201ENST00000238112 DQX1Q8TE96 717 aaKnown RBP18.94■□□□□ 0.62
CPSF3-201ENST00000238112 DLG3Q92796 817 aa18.94■□□□□ 0.62
CPSF3-201ENST00000238112 MYLPFQ96A32 169 aa18.94■□□□□ 0.62
CPSF3-201ENST00000238112 GPR78Q96P69 363 aa18.94■□□□□ 0.62
CPSF3-201ENST00000238112 GAD1Q99259 594 aa18.94■□□□□ 0.62
CPSF3-201ENST00000238112 FSD1LQ9BXM9 530 aa18.94■□□□□ 0.62
CPSF3-201ENST00000238112 VCX3AQ9NNX9 186 aa18.94■□□□□ 0.62
CPSF3-201ENST00000238112 TCAF1Q9Y4C2 921 aa18.94■□□□□ 0.62
CPSF3-201ENST00000238112 SLC4A7Q9Y6M7 1214 aa18.94■□□□□ 0.62
CPSF3-201ENST00000238112 A0A087X1B8 175 aa18.94■□□□□ 0.62
CPSF3-201ENST00000238112 AP1G1O43747 822 aa18.94■□□□□ 0.62
CPSF3-201ENST00000238112 CYP2C18P33260 490 aa18.94■□□□□ 0.62
CPSF3-201ENST00000238112 GRIA2P42262 883 aa18.94■□□□□ 0.62
CPSF3-201ENST00000238112 ARCN1P48444 511 aaKnown RBP18.94■□□□□ 0.62
CPSF3-201ENST00000238112 CD151P48509 253 aa18.94■□□□□ 0.62
CPSF3-201ENST00000238112 GEMP55040 296 aa18.94■□□□□ 0.62
CPSF3-201ENST00000238112 DYNC1I2Q13409 638 aaKnown RBP18.94■□□□□ 0.62
CPSF3-201ENST00000238112 RFTN1Q14699 578 aaPredicted RBP18.94■□□□□ 0.62
CPSF3-201ENST00000238112 TLR1Q15399 786 aa18.94■□□□□ 0.62
CPSF3-201ENST00000238112 PIWIL4Q7Z3Z4 852 aaKnown RBP18.94■□□□□ 0.62
CPSF3-201ENST00000238112 MFSD6LQ8IWD5 586 aa18.94■□□□□ 0.62
CPSF3-201ENST00000238112 MARVELD2Q8N4S9 558 aa18.94■□□□□ 0.62
CPSF3-201ENST00000238112 KDM1BQ8NB78 822 aa18.94■□□□□ 0.62
CPSF3-201ENST00000238112 PTCD2Q8WV60 388 aaKnown RBP18.94■□□□□ 0.62
CPSF3-201ENST00000238112 SGF29Q96ES7 293 aa18.94■□□□□ 0.62
CPSF3-201ENST00000238112 TMA16Q96EY4 203 aaKnown RBP18.94■□□□□ 0.62
CPSF3-201ENST00000238112 MRPL57Q9BQC6 102 aaKnown RBP18.94■□□□□ 0.62
CPSF3-201ENST00000238112 POMKQ9H5K3 350 aa18.94■□□□□ 0.62
CPSF3-201ENST00000238112 COPS7BQ9H9Q2 264 aaPredicted RBP18.94■□□□□ 0.62
CPSF3-201ENST00000238112 GTSE1Q9NYZ3 720 aa18.94■□□□□ 0.62
CPSF3-201ENST00000238112 TMEM233B4DJY2 109 aa18.93■□□□□ 0.62
CPSF3-201ENST00000238112 HAS3O00219 553 aa18.93■□□□□ 0.62
CPSF3-201ENST00000238112 PMLP29590 882 aa18.93■□□□□ 0.62
CPSF3-201ENST00000238112 RAB27AP51159 221 aa18.93■□□□□ 0.62
CPSF3-201ENST00000238112 MS4A2Q01362 244 aa18.93■□□□□ 0.62
CPSF3-201ENST00000238112 TSTD2Q5T7W7 516 aa18.93■□□□□ 0.62
CPSF3-201ENST00000238112 ZNF470Q6ECI4 717 aa18.93■□□□□ 0.62
CPSF3-201ENST00000238112 CEP70Q8NHQ1 597 aa18.93■□□□□ 0.62
CPSF3-201ENST00000238112 BRI3BPQ8WY22 251 aa18.93■□□□□ 0.62
CPSF3-201ENST00000238112 NCSTNQ92542 709 aa18.93■□□□□ 0.62
CPSF3-201ENST00000238112 ZNF408Q9H9D4 720 aa18.93■□□□□ 0.62
CPSF3-201ENST00000238112 CSNK1G1Q9HCP0 422 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms