RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 PCK1P35558 622 aa16.3■□□□□ 0.2
BRCA1-228ENST00000618469 ATXN3P54252 364 aaPredicted RBP16.3■□□□□ 0.2
BRCA1-228ENST00000618469 GEMIN4P57678 1058 aaKnown RBP16.3■□□□□ 0.2
BRCA1-228ENST00000618469 MAPK8IP2Q13387 824 aaPredicted RBP16.3■□□□□ 0.2
BRCA1-228ENST00000618469 SLC18A3Q16572 532 aa16.3■□□□□ 0.2
BRCA1-228ENST00000618469 SMTNL2Q2TAL5 461 aa16.3■□□□□ 0.2
BRCA1-228ENST00000618469 COL28A1Q2UY09 1125 aa16.3■□□□□ 0.2
BRCA1-228ENST00000618469 NCEH1Q6PIU2 408 aa16.3■□□□□ 0.2
BRCA1-228ENST00000618469 LEKR1Q6ZMV7 388 aa16.3■□□□□ 0.2
BRCA1-228ENST00000618469 PIP4P1Q86T03 277 aa16.3■□□□□ 0.2
BRCA1-228ENST00000618469 CNGA4Q8IV77 575 aa16.3■□□□□ 0.2
BRCA1-228ENST00000618469 PCDH20Q8N6Y1 951 aaKnown RBP16.3■□□□□ 0.2
BRCA1-228ENST00000618469 PNPLA1Q8N8W4 532 aa16.3■□□□□ 0.2
BRCA1-228ENST00000618469 CHST14Q8NCH0 376 aa16.3■□□□□ 0.2
BRCA1-228ENST00000618469 OR14C36Q8NHC7 312 aa16.3■□□□□ 0.2
BRCA1-228ENST00000618469 ZNF564Q8TBZ8 553 aaPredicted RBP16.3■□□□□ 0.2
BRCA1-228ENST00000618469 BIRC7Q96CA5 298 aa16.3■□□□□ 0.2
BRCA1-228ENST00000618469 HMCESQ96FZ2 354 aa16.3■□□□□ 0.2
BRCA1-228ENST00000618469 EIF3CQ99613 913 aaKnown RBP16.3■□□□□ 0.2
BRCA1-228ENST00000618469 NCAPGQ9BPX3 1015 aa16.3■□□□□ 0.2
BRCA1-228ENST00000618469 TM6SF2Q9BZW4 377 aa16.3■□□□□ 0.2
BRCA1-228ENST00000618469 CEP44Q9C0F1 390 aa16.3■□□□□ 0.2
BRCA1-228ENST00000618469 NOL6Q9H6R4 1146 aaKnown RBP16.3■□□□□ 0.2
BRCA1-228ENST00000618469 PPM1HQ9ULR3 514 aa16.3■□□□□ 0.2
BRCA1-228ENST00000618469 PLXNB3Q9ULL4 1909 aa16.29■□□□□ 0.2
BRCA1-228ENST00000618469 FREM2Q5SZK8 3169 aa16.29■□□□□ 0.2
BRCA1-228ENST00000618469 LRRC72A6NJI9 287 aa16.29■□□□□ 0.2
BRCA1-228ENST00000618469 WASH4PA8MWX3 477 aa16.29■□□□□ 0.2
BRCA1-228ENST00000618469 RASA4BC9J798 803 aa16.29■□□□□ 0.2
BRCA1-228ENST00000618469 KPNA3O00505 521 aaPredicted RBP16.29■□□□□ 0.2
BRCA1-228ENST00000618469 BCAT2O15382 392 aaPredicted RBP16.29■□□□□ 0.2
BRCA1-228ENST00000618469 RASA4O43374 803 aa16.29■□□□□ 0.2
BRCA1-228ENST00000618469 CD160O95971 181 aa16.29■□□□□ 0.2
BRCA1-228ENST00000618469 CHRNA3P32297 505 aa16.29■□□□□ 0.2
BRCA1-228ENST00000618469 DNA2P51530 1060 aa16.29■□□□□ 0.2
BRCA1-228ENST00000618469 SLC20A2Q08357 652 aa16.29■□□□□ 0.2
BRCA1-228ENST00000618469 CNTN1Q12860 1018 aa16.29■□□□□ 0.2
BRCA1-228ENST00000618469 PIGHQ14442 188 aaPredicted RBP16.29■□□□□ 0.2
BRCA1-228ENST00000618469 PARP15Q460N3 678 aa16.29■□□□□ 0.2
BRCA1-228ENST00000618469 KCNT1Q5JUK3 1230 aa16.29■□□□□ 0.2
BRCA1-228ENST00000618469 KIAA0895LQ68EN5 471 aa16.29■□□□□ 0.2
BRCA1-228ENST00000618469 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP16.29■□□□□ 0.2
BRCA1-228ENST00000618469 DPY19L3Q6ZPD9 716 aa16.29■□□□□ 0.2
BRCA1-228ENST00000618469 RFX8Q6ZV50 586 aa16.29■□□□□ 0.2
BRCA1-228ENST00000618469 PDZD3Q86UT5 571 aa16.29■□□□□ 0.2
BRCA1-228ENST00000618469 PROSER1Q86XN7 944 aa16.29■□□□□ 0.2
BRCA1-228ENST00000618469 OR2T34Q8NGX1 318 aa16.29■□□□□ 0.2
BRCA1-228ENST00000618469 CTNNBL1Q8WYA6 563 aaPredicted RBP16.29■□□□□ 0.2
BRCA1-228ENST00000618469 PACSIN1Q9BY11 444 aa16.29■□□□□ 0.2
BRCA1-228ENST00000618469 RBSNQ9H1K0 784 aa16.29■□□□□ 0.2
BRCA1-228ENST00000618469 ZWILCHQ9H900 591 aa16.29■□□□□ 0.2
BRCA1-228ENST00000618469 CTTNBP2NLQ9P2B4 639 aa16.29■□□□□ 0.2
BRCA1-228ENST00000618469 IL36AQ9UHA7 158 aa16.29■□□□□ 0.2
BRCA1-228ENST00000618469 IP6K2Q9UHH9 426 aa16.29■□□□□ 0.2
BRCA1-228ENST00000618469 GPSM3Q9Y4H4 160 aa16.29■□□□□ 0.2
BRCA1-228ENST00000618469 SLCO1B1Q9Y6L6 691 aa16.29■□□□□ 0.2
BRCA1-228ENST00000618469 LOC400499M0QZD8 3231 aa16.29■□□□□ 0.2
BRCA1-228ENST00000618469 TP53BP1Q12888 1972 aaPredicted RBP16.28■□□□□ 0.2
BRCA1-228ENST00000618469 CXorf51AA0A1B0GTR3 108 aa16.28■□□□□ 0.2
BRCA1-228ENST00000618469 ZSCAN5CA6NGD5 496 aaPredicted RBP16.28■□□□□ 0.2
BRCA1-228ENST00000618469 AKR1B15C9JRZ8 316 aaPredicted RBP16.28■□□□□ 0.2
BRCA1-228ENST00000618469 DAPK3O43293 454 aa16.28■□□□□ 0.2
BRCA1-228ENST00000618469 KDELR3O43731 214 aa16.28■□□□□ 0.2
BRCA1-228ENST00000618469 ZNF821O75541 412 aaPredicted RBP16.28■□□□□ 0.2
BRCA1-228ENST00000618469 PRNPP04156 253 aa16.28■□□□□ 0.2
BRCA1-228ENST00000618469 CAPNS1P04632 268 aa16.28■□□□□ 0.2
BRCA1-228ENST00000618469 IGHV4-34P06331 123 aa16.28■□□□□ 0.2
BRCA1-228ENST00000618469 IL1R2P27930 398 aa16.28■□□□□ 0.2
BRCA1-228ENST00000618469 CCNHP51946 323 aaPredicted RBP16.28■□□□□ 0.2
BRCA1-228ENST00000618469 YBEYP58557 167 aaPredicted RBP16.28■□□□□ 0.2
BRCA1-228ENST00000618469 GRIK2Q13002 908 aa16.28■□□□□ 0.2
BRCA1-228ENST00000618469 ASTE1Q2TB18 679 aaPredicted RBP16.28■□□□□ 0.2
BRCA1-228ENST00000618469 AGBL4Q5VU57 503 aa16.28■□□□□ 0.2
BRCA1-228ENST00000618469 PSTKQ8IV42 348 aaKnown RBP16.28■□□□□ 0.2
BRCA1-228ENST00000618469 UMODL1-AS1Q8N2C9 162 aa16.28■□□□□ 0.2
BRCA1-228ENST00000618469 NIPA2Q8N8Q9 360 aa16.28■□□□□ 0.2
BRCA1-228ENST00000618469 HNRNPLLQ8WVV9 542 aaKnown RBP16.28■□□□□ 0.2
BRCA1-228ENST00000618469 HSPH1Q92598 858 aa16.28■□□□□ 0.2
BRCA1-228ENST00000618469 CELF6Q96J87 481 aaKnown RBP16.28■□□□□ 0.2
BRCA1-228ENST00000618469 CHP1Q99653 195 aa16.28■□□□□ 0.2
BRCA1-228ENST00000618469 DYRK4Q9NR20 520 aa16.28■□□□□ 0.2
BRCA1-228ENST00000618469 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.28■□□□□ 0.2
BRCA1-228ENST00000618469 ITPR1Q14643 2758 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 LAMA5O15230 3695 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 MYO1FO00160 1098 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 ARHGAP33O14559 1287 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 SLC7A4O43246 635 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 BUB1O43683 1085 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 LEFTY1O75610 366 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 TMCC1O94876 653 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 SYPP08247 313 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 H2AFZP0C0S5 128 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 CD27P26842 260 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 SSR1P43307 286 aaKnown RBP16.27■□□□□ 0.2
BRCA1-228ENST00000618469 PPP2CBP62714 309 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 PPP2CAP67775 309 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 SLC25A11Q02978 314 aaKnown RBP16.27■□□□□ 0.2
BRCA1-228ENST00000618469 TBX2Q13207 712 aaPredicted RBP16.27■□□□□ 0.2
BRCA1-228ENST00000618469 SERINC3Q13530 473 aa16.27■□□□□ 0.2
BRCA1-228ENST00000618469 DPYSL2Q16555 572 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms