RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 SLC10A7Q0GE19 358 aa19.66■□□□□ 0.74
UPF1-209ENST00000600310 DSG4Q86SJ6 1040 aa19.66■□□□□ 0.74
UPF1-209ENST00000600310 MMAAQ8IVH4 418 aaKnown RBP19.66■□□□□ 0.74
UPF1-209ENST00000600310 CHST14Q8NCH0 376 aa19.66■□□□□ 0.74
UPF1-209ENST00000600310 NSMCE1Q8WV22 266 aa19.66■□□□□ 0.74
UPF1-209ENST00000600310 MAML1Q92585 1016 aa19.66■□□□□ 0.74
UPF1-209ENST00000600310 P3H4Q92791 437 aa19.66■□□□□ 0.74
UPF1-209ENST00000600310 TPSD1Q9BZJ3 242 aa19.66■□□□□ 0.74
UPF1-209ENST00000600310 BRD8Q9H0E9 1235 aa19.66■□□□□ 0.74
UPF1-209ENST00000600310 CARD9Q9H257 536 aa19.66■□□□□ 0.74
UPF1-209ENST00000600310 SAE1Q9UBE0 346 aaPredicted RBP19.66■□□□□ 0.74
UPF1-209ENST00000600310 SEPT3Q9UH03 358 aa19.66■□□□□ 0.74
UPF1-209ENST00000600310 PPM1HQ9ULR3 514 aa19.66■□□□□ 0.74
UPF1-209ENST00000600310 JRKLQ9Y4A0 524 aa19.66■□□□□ 0.74
UPF1-209ENST00000600310 APOC4-APOC2K7ER74 178 aa19.65■□□□□ 0.74
UPF1-209ENST00000600310 PPP1R12AO14974 1030 aaPredicted RBP19.65■□□□□ 0.74
UPF1-209ENST00000600310 MATN3O15232 486 aa19.65■□□□□ 0.74
UPF1-209ENST00000600310 LILRB5O75023 590 aa19.65■□□□□ 0.74
UPF1-209ENST00000600310 ZNF217O75362 1048 aa19.65■□□□□ 0.74
UPF1-209ENST00000600310 APOC2P02655 101 aa19.65■□□□□ 0.74
UPF1-209ENST00000600310 MSNP26038 577 aaKnown RBP19.65■□□□□ 0.74
UPF1-209ENST00000600310 CHRNA3P32297 505 aa19.65■□□□□ 0.74
UPF1-209ENST00000600310 CNR2P34972 360 aa19.65■□□□□ 0.74
UPF1-209ENST00000600310 CCNHP51946 323 aaPredicted RBP19.65■□□□□ 0.74
UPF1-209ENST00000600310 HNRNPDQ14103 355 aaKnown RBP19.65■□□□□ 0.74
UPF1-209ENST00000600310 CST6Q15828 149 aa19.65■□□□□ 0.74
UPF1-209ENST00000600310 CCDC13Q8IYE1 715 aa19.65■□□□□ 0.74
UPF1-209ENST00000600310 SLC35F6Q8N357 371 aa19.65■□□□□ 0.74
UPF1-209ENST00000600310 TEX26Q8N6G2 289 aa19.65■□□□□ 0.74
UPF1-209ENST00000600310 CCNYQ8ND76 341 aa19.65■□□□□ 0.74
UPF1-209ENST00000600310 GDAP1L1Q96MZ0 367 aa19.65■□□□□ 0.74
UPF1-209ENST00000600310 PSKH2Q96QS6 385 aa19.65■□□□□ 0.74
UPF1-209ENST00000600310 LGMNQ99538 433 aa19.65■□□□□ 0.74
UPF1-209ENST00000600310 HEPHQ9BQS7 1158 aa19.65■□□□□ 0.74
UPF1-209ENST00000600310 CINPQ9BW66 212 aaPredicted RBP19.65■□□□□ 0.74
UPF1-209ENST00000600310 ITM2CQ9NQX7 267 aa19.65■□□□□ 0.74
UPF1-209ENST00000600310 USP36Q9P275 1121 aaKnown RBP19.65■□□□□ 0.74
UPF1-209ENST00000600310 HECAQ9UBI9 543 aaPredicted RBP19.65■□□□□ 0.74
UPF1-209ENST00000600310 SCML1Q9UN30 329 aa19.65■□□□□ 0.74
UPF1-209ENST00000600310 NYNRINQ9P2P1 1898 aaKnown RBP19.65■□□□□ 0.74
UPF1-209ENST00000600310 KCNK3O14649 394 aa19.64■□□□□ 0.73
UPF1-209ENST00000600310 POP4O95707 220 aaKnown RBP19.64■□□□□ 0.73
UPF1-209ENST00000600310 IGSF6O95976 241 aa19.64■□□□□ 0.73
UPF1-209ENST00000600310 IL1BP01584 269 aa19.64■□□□□ 0.73
UPF1-209ENST00000600310 PRNPP04156 253 aa19.64■□□□□ 0.73
UPF1-209ENST00000600310 CTSLP07711 333 aa19.64■□□□□ 0.73
UPF1-209ENST00000600310 C5AR1P21730 350 aa19.64■□□□□ 0.73
UPF1-209ENST00000600310 SLC8A1P32418 973 aa19.64■□□□□ 0.73
UPF1-209ENST00000600310 HSPA9P38646 679 aaKnown RBP19.64■□□□□ 0.73
UPF1-209ENST00000600310 P2RY2P41231 377 aa19.64■□□□□ 0.73
UPF1-209ENST00000600310 RENBPP51606 427 aa19.64■□□□□ 0.73
UPF1-209ENST00000600310 BYSLQ13895 437 aaKnown RBP19.64■□□□□ 0.73
UPF1-209ENST00000600310 MYLK3Q32MK0 819 aa19.64■□□□□ 0.73
UPF1-209ENST00000600310 MAP7D1Q3KQU3 841 aa19.64■□□□□ 0.73
UPF1-209ENST00000600310 USP39Q53GS9 565 aaKnown RBP19.64■□□□□ 0.73
UPF1-209ENST00000600310 ATXN7L2Q5T6C5 722 aaPredicted RBP19.64■□□□□ 0.73
UPF1-209ENST00000600310 SEL1L2Q5TEA6 688 aa19.64■□□□□ 0.73
UPF1-209ENST00000600310 CCDC181Q5TID7 509 aa19.64■□□□□ 0.73
UPF1-209ENST00000600310 MARC1Q5VT66 337 aa19.64■□□□□ 0.73
UPF1-209ENST00000600310 FAM46CQ5VWP2 391 aa19.64■□□□□ 0.73
UPF1-209ENST00000600310 CACUL1Q86Y37 369 aa19.64■□□□□ 0.73
UPF1-209ENST00000600310 BBS5Q8N3I7 341 aa19.64■□□□□ 0.73
UPF1-209ENST00000600310 TSEN2Q8NCE0 465 aaKnown RBP19.64■□□□□ 0.73
UPF1-209ENST00000600310 TMIEQ8NEW7 156 aa19.64■□□□□ 0.73
UPF1-209ENST00000600310 LRRN4Q8WUT4 740 aa19.64■□□□□ 0.73
UPF1-209ENST00000600310 PABPC3Q9H361 631 aaKnown RBP19.64■□□□□ 0.73
UPF1-209ENST00000600310 IL36AQ9UHA7 158 aa19.64■□□□□ 0.73
UPF1-209ENST00000600310 WASF2Q9Y6W5 498 aa19.64■□□□□ 0.73
UPF1-209ENST00000600310 C1QTNF3-AMACRE9PGA6 284 aa19.63■□□□□ 0.73
UPF1-209ENST00000600310 HRO43593 1189 aa19.63■□□□□ 0.73
UPF1-209ENST00000600310 ADH1BP00325 375 aa19.63■□□□□ 0.73
UPF1-209ENST00000600310 IGLV3-19P01714 112 aa19.63■□□□□ 0.73
UPF1-209ENST00000600310 DNTTP04053 509 aa19.63■□□□□ 0.73
UPF1-209ENST00000600310 ACADMP11310 421 aa19.63■□□□□ 0.73
UPF1-209ENST00000600310 MMP13P45452 471 aa19.63■□□□□ 0.73
UPF1-209ENST00000600310 PSMD8P48556 350 aa19.63■□□□□ 0.73
UPF1-209ENST00000600310 CSNK1DP48730 415 aa19.63■□□□□ 0.73
UPF1-209ENST00000600310 NSUN2Q08J23 767 aaKnown RBP eCLIP19.63■□□□□ 0.73
UPF1-209ENST00000600310 KLF1Q13351 362 aaPredicted RBP19.63■□□□□ 0.73
UPF1-209ENST00000600310 XRCC4Q13426 336 aa19.63■□□□□ 0.73
UPF1-209ENST00000600310 NOMO1Q15155 1222 aa19.63■□□□□ 0.73
UPF1-209ENST00000600310 ZC3H14Q6PJT7 736 aaKnown RBP19.63■□□□□ 0.73
UPF1-209ENST00000600310 RYBPQ8N488 228 aaPredicted RBP19.63■□□□□ 0.73
UPF1-209ENST00000600310 PIP4K2CQ8TBX8 421 aa19.63■□□□□ 0.73
UPF1-209ENST00000600310 GAB3Q8WWW8 586 aa19.63■□□□□ 0.73
UPF1-209ENST00000600310 VOPP1Q96AW1 172 aa19.63■□□□□ 0.73
UPF1-209ENST00000600310 HAUS1Q96CS2 278 aa19.63■□□□□ 0.73
UPF1-209ENST00000600310 LRIG1Q96JA1 1093 aa19.63■□□□□ 0.73
UPF1-209ENST00000600310 SARDHQ9UL12 918 aa19.63■□□□□ 0.73
UPF1-209ENST00000600310 ENC1O14682 589 aa19.62■□□□□ 0.73
UPF1-209ENST00000600310 MUSKO15146 869 aa19.62■□□□□ 0.73
UPF1-209ENST00000600310 MID1O15344 667 aa19.62■□□□□ 0.73
UPF1-209ENST00000600310 CCNB1P14635 433 aa19.62■□□□□ 0.73
UPF1-209ENST00000600310 RGRP47804 291 aa19.62■□□□□ 0.73
UPF1-209ENST00000600310 TPMTP51580 245 aa19.62■□□□□ 0.73
UPF1-209ENST00000600310 RAD51Q06609 339 aa19.62■□□□□ 0.73
UPF1-209ENST00000600310 AP1B1Q10567 949 aa19.62■□□□□ 0.73
UPF1-209ENST00000600310 SFSWAPQ12872 951 aaKnown RBP19.62■□□□□ 0.73
UPF1-209ENST00000600310 ZNF235Q14590 738 aa19.62■□□□□ 0.73
UPF1-209ENST00000600310 PRKD1Q15139 912 aaPredicted RBP19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms