RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 SLC6A18Q96N87 628 aa24.34■■□□□ 1.49
SHMT1-206ENST00000579558 KCTD15Q96SI1 283 aaPredicted RBP24.34■■□□□ 1.49
SHMT1-206ENST00000579558 GAREM1Q9H706 876 aa24.34■■□□□ 1.49
SHMT1-206ENST00000579558 DONSONQ9NYP3 566 aa24.34■■□□□ 1.49
SHMT1-206ENST00000579558 WASF2Q9Y6W5 498 aa24.34■■□□□ 1.49
SHMT1-206ENST00000579558 UPK3BL1B0FP48 263 aa24.33■■□□□ 1.49
SHMT1-206ENST00000579558 UPK3BL2E5RIL1 263 aa24.33■■□□□ 1.49
SHMT1-206ENST00000579558 RNF103O00237 685 aa24.33■■□□□ 1.49
SHMT1-206ENST00000579558 TPM1P09493 284 aa24.33■■□□□ 1.49
SHMT1-206ENST00000579558 PCK1P35558 622 aa24.33■■□□□ 1.49
SHMT1-206ENST00000579558 EIF4A3P38919 411 aaKnown RBP24.33■■□□□ 1.49
SHMT1-206ENST00000579558 KIF19Q2TAC6 998 aa24.33■■□□□ 1.49
SHMT1-206ENST00000579558 PPP6R3Q5H9R7 873 aaPredicted RBP24.33■■□□□ 1.49
SHMT1-206ENST00000579558 PIP5KL1Q5T9C9 394 aa24.33■■□□□ 1.49
SHMT1-206ENST00000579558 N4BP2L1Q5TBK1 243 aaPredicted RBP24.33■■□□□ 1.49
SHMT1-206ENST00000579558 PSTKQ8IV42 348 aaKnown RBP24.33■■□□□ 1.49
SHMT1-206ENST00000579558 RYBPQ8N488 228 aaPredicted RBP24.33■■□□□ 1.49
SHMT1-206ENST00000579558 OR8K1Q8NGG5 319 aa24.33■■□□□ 1.49
SHMT1-206ENST00000579558 NUP85Q9BW27 656 aa24.33■■□□□ 1.49
SHMT1-206ENST00000579558 KLC2Q9H0B6 622 aa24.33■■□□□ 1.49
SHMT1-206ENST00000579558 SLC32A1Q9H598 525 aa24.33■■□□□ 1.49
SHMT1-206ENST00000579558 ZDHHC6Q9H6R6 413 aa24.33■■□□□ 1.49
SHMT1-206ENST00000579558 IL21RQ9HBE5 538 aa24.33■■□□□ 1.49
SHMT1-206ENST00000579558 AASDHPPTQ9NRN7 309 aa24.33■■□□□ 1.49
SHMT1-206ENST00000579558 HECAQ9UBI9 543 aaPredicted RBP24.33■■□□□ 1.49
SHMT1-206ENST00000579558 ANKRD6Q9Y2G4 727 aa24.33■■□□□ 1.49
SHMT1-206ENST00000579558 DAPK3O43293 454 aa24.32■■□□□ 1.48
SHMT1-206ENST00000579558 LATO43561 262 aa24.32■■□□□ 1.48
SHMT1-206ENST00000579558 CYP1A2P05177 515 aa24.32■■□□□ 1.48
SHMT1-206ENST00000579558 CEACAM1P13688 526 aa24.32■■□□□ 1.48
SHMT1-206ENST00000579558 CD59P13987 128 aa24.32■■□□□ 1.48
SHMT1-206ENST00000579558 TAS2R38P59533 333 aa24.32■■□□□ 1.48
SHMT1-206ENST00000579558 SLC14A1Q13336 389 aa24.32■■□□□ 1.48
SHMT1-206ENST00000579558 SERINC3Q13530 473 aa24.32■■□□□ 1.48
SHMT1-206ENST00000579558 PIGHQ14442 188 aaPredicted RBP24.32■■□□□ 1.48
SHMT1-206ENST00000579558 HLA-BQ31612 363 aa24.32■■□□□ 1.48
SHMT1-206ENST00000579558 RFX8Q6ZV50 586 aa24.32■■□□□ 1.48
SHMT1-206ENST00000579558 ERN2Q76MJ5 926 aaKnown RBP24.32■■□□□ 1.48
SHMT1-206ENST00000579558 PIP4P1Q86T03 277 aa24.32■■□□□ 1.48
SHMT1-206ENST00000579558 PRPF39Q86UA1 669 aaKnown RBP24.32■■□□□ 1.48
SHMT1-206ENST00000579558 PLPP6Q8IY26 295 aa24.32■■□□□ 1.48
SHMT1-206ENST00000579558 ARHGEF26Q96DR7 871 aa24.32■■□□□ 1.48
SHMT1-206ENST00000579558 DNAJC7Q99615 494 aa24.32■■□□□ 1.48
SHMT1-206ENST00000579558 PREBQ9HCU5 417 aa24.32■■□□□ 1.48
SHMT1-206ENST00000579558 ZNHIT6Q9NWK9 470 aaKnown RBP24.32■■□□□ 1.48
SHMT1-206ENST00000579558 ANAPC7Q9UJX3 599 aa24.32■■□□□ 1.48
SHMT1-206ENST00000579558 SNX11Q9Y5W9 270 aa24.32■■□□□ 1.48
SHMT1-206ENST00000579558 TMCC1O94876 653 aa24.31■■□□□ 1.48
SHMT1-206ENST00000579558 GSRP00390 522 aa24.31■■□□□ 1.48
SHMT1-206ENST00000579558 MAT2AP31153 395 aaKnown RBP24.31■■□□□ 1.48
SHMT1-206ENST00000579558 C21orf59P57076 290 aa24.31■■□□□ 1.48
SHMT1-206ENST00000579558 SNRPD1P62314 119 aaKnown RBP24.31■■□□□ 1.48
SHMT1-206ENST00000579558 TRIM69Q86WT6 500 aa24.31■■□□□ 1.48
SHMT1-206ENST00000579558 OR2AP1Q8NGE2 309 aa24.31■■□□□ 1.48
SHMT1-206ENST00000579558 OR6K2Q8NGY2 324 aa24.31■■□□□ 1.48
SHMT1-206ENST00000579558 CASKIN2Q8WXE0 1202 aa24.31■■□□□ 1.48
SHMT1-206ENST00000579558 SERAC1Q96JX3 654 aa24.31■■□□□ 1.48
SHMT1-206ENST00000579558 BTBD6Q96KE9 485 aa24.31■■□□□ 1.48
SHMT1-206ENST00000579558 HDAC8Q9BY41 377 aa24.31■■□□□ 1.48
SHMT1-206ENST00000579558 LRRC19Q9H756 370 aa24.31■■□□□ 1.48
SHMT1-206ENST00000579558 IP6K2Q9UHH9 426 aa24.31■■□□□ 1.48
SHMT1-206ENST00000579558 NENFQ9UMX5 172 aa24.31■■□□□ 1.48
SHMT1-206ENST00000579558 FNDC3AQ9Y2H6 1198 aaKnown RBP24.31■■□□□ 1.48
SHMT1-206ENST00000579558 VILLO15195 856 aa24.3■■□□□ 1.48
SHMT1-206ENST00000579558 ITGB7P26010 798 aa24.3■■□□□ 1.48
SHMT1-206ENST00000579558 IL1R2P27930 398 aa24.3■■□□□ 1.48
SHMT1-206ENST00000579558 ZNF135P52742 658 aaPredicted RBP24.3■■□□□ 1.48
SHMT1-206ENST00000579558 NDST2P52849 883 aa24.3■■□□□ 1.48
SHMT1-206ENST00000579558 TSR1Q2NL82 804 aaKnown RBP24.3■■□□□ 1.48
SHMT1-206ENST00000579558 SMTNL2Q2TAL5 461 aa24.3■■□□□ 1.48
SHMT1-206ENST00000579558 SKA1Q96BD8 255 aa24.3■■□□□ 1.48
SHMT1-206ENST00000579558 CELF6Q96J87 481 aaKnown RBP24.3■■□□□ 1.48
SHMT1-206ENST00000579558 DEF6Q9H4E7 631 aa24.3■■□□□ 1.48
SHMT1-206ENST00000579558 ZWILCHQ9H900 591 aa24.3■■□□□ 1.48
SHMT1-206ENST00000579558 KRIT1O00522 736 aa24.29■■□□□ 1.48
SHMT1-206ENST00000579558 RNGTTO60942 597 aaKnown RBP24.29■■□□□ 1.48
SHMT1-206ENST00000579558 TCF4P15884 667 aa24.29■■□□□ 1.48
SHMT1-206ENST00000579558 ERCC2P18074 760 aa24.29■■□□□ 1.48
SHMT1-206ENST00000579558 CD38P28907 300 aa24.29■■□□□ 1.48
SHMT1-206ENST00000579558 GKP32189 559 aa24.29■■□□□ 1.48
SHMT1-206ENST00000579558 NUDT1P36639 197 aa24.29■■□□□ 1.48
SHMT1-206ENST00000579558 NEK3P51956 506 aa24.29■■□□□ 1.48
SHMT1-206ENST00000579558 SLC18A3Q16572 532 aa24.29■■□□□ 1.48
SHMT1-206ENST00000579558 BOLA3Q53S33 107 aa24.29■■□□□ 1.48
SHMT1-206ENST00000579558 INO80DQ53TQ3 878 aaPredicted RBP24.29■■□□□ 1.48
SHMT1-206ENST00000579558 KCNT1Q5JUK3 1230 aa24.29■■□□□ 1.48
SHMT1-206ENST00000579558 ATXN7L2Q5T6C5 722 aaPredicted RBP24.29■■□□□ 1.48
SHMT1-206ENST00000579558 NAPEPLDQ6IQ20 393 aa24.29■■□□□ 1.48
SHMT1-206ENST00000579558 NIPA2Q8N8Q9 360 aa24.29■■□□□ 1.48
SHMT1-206ENST00000579558 HSPH1Q92598 858 aa24.29■■□□□ 1.48
SHMT1-206ENST00000579558 TM7SF3Q9NS93 570 aa24.29■■□□□ 1.48
SHMT1-206ENST00000579558 ABHD10Q9NUJ1 306 aa24.29■■□□□ 1.48
SHMT1-206ENST00000579558 CWC15Q9P013 229 aaKnown RBP24.29■■□□□ 1.48
SHMT1-206ENST00000579558 DMTF1Q9Y222 760 aa24.29■■□□□ 1.48
SHMT1-206ENST00000579558 TMEM131Q92545 1883 aa24.29■■□□□ 1.48
SHMT1-206ENST00000579558 ARHGAP42A6NI28 874 aa24.28■■□□□ 1.48
SHMT1-206ENST00000579558 H3BRJ5 948 aa24.28■■□□□ 1.48
SHMT1-206ENST00000579558 MYO1FO00160 1098 aa24.28■■□□□ 1.48
SHMT1-206ENST00000579558 WNT9AO14904 365 aa24.28■■□□□ 1.48
SHMT1-206ENST00000579558 MFAP3LO75121 409 aa24.28■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms