RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 HLA-DQB2P05538 268 aa15.52■□□□□ 0.08
SS18-206ENST00000577572 SRPRAP08240 638 aaKnown RBP15.52■□□□□ 0.08
SS18-206ENST00000577572 GLULP15104 373 aa15.52■□□□□ 0.08
SS18-206ENST00000577572 POLR2EP19388 210 aaKnown RBP15.52■□□□□ 0.08
SS18-206ENST00000577572 NFKB1P19838 968 aa15.52■□□□□ 0.08
SS18-206ENST00000577572 PSMB4P28070 264 aa15.52■□□□□ 0.08
SS18-206ENST00000577572 GDI1P31150 447 aa15.52■□□□□ 0.08
SS18-206ENST00000577572 NNMTP40261 264 aa15.52■□□□□ 0.08
SS18-206ENST00000577572 LMAN1P49257 510 aa15.52■□□□□ 0.08
SS18-206ENST00000577572 NRLP54845 237 aa15.52■□□□□ 0.08
SS18-206ENST00000577572 ARL4CP56559 192 aa15.52■□□□□ 0.08
SS18-206ENST00000577572 KCTD11Q693B1 232 aa15.52■□□□□ 0.08
SS18-206ENST00000577572 TRIM68Q6AZZ1 485 aa15.52■□□□□ 0.08
SS18-206ENST00000577572 GRAMD4Q6IC98 578 aa15.52■□□□□ 0.08
SS18-206ENST00000577572 NAPEPLDQ6IQ20 393 aa15.52■□□□□ 0.08
SS18-206ENST00000577572 CENPUQ71F23 418 aa15.52■□□□□ 0.08
SS18-206ENST00000577572 Q7L0L9 218 aa15.52■□□□□ 0.08
SS18-206ENST00000577572 ADIPOR2Q86V24 386 aa15.52■□□□□ 0.08
SS18-206ENST00000577572 APCDD1Q8J025 514 aa15.52■□□□□ 0.08
SS18-206ENST00000577572 LRRN4Q8WUT4 740 aa15.52■□□□□ 0.08
SS18-206ENST00000577572 DNASE1L2Q92874 299 aa15.52■□□□□ 0.08
SS18-206ENST00000577572 KXD1Q9BQD3 176 aa15.52■□□□□ 0.08
SS18-206ENST00000577572 PLA2G2FQ9BZM2 168 aa15.52■□□□□ 0.08
SS18-206ENST00000577572 NT5MQ9NPB1 228 aa15.52■□□□□ 0.08
SS18-206ENST00000577572 FAM153AQ9UHL3 310 aa15.52■□□□□ 0.08
SS18-206ENST00000577572 SLC25A13Q9UJS0 675 aa15.52■□□□□ 0.08
SS18-206ENST00000577572 INTS6Q9UL03 887 aaKnown RBP15.52■□□□□ 0.08
SS18-206ENST00000577572 SLC8A2Q9UPR5 921 aa15.52■□□□□ 0.08
SS18-206ENST00000577572 ARIH1Q9Y4X5 557 aaPredicted RBP15.52■□□□□ 0.08
SS18-206ENST00000577572 NUP205Q92621 2012 aa15.51■□□□□ 0.07
SS18-206ENST00000577572 E7ESA3 106 aa15.51■□□□□ 0.07
SS18-206ENST00000577572 NPC1O15118 1278 aa15.51■□□□□ 0.07
SS18-206ENST00000577572 TMCC1O94876 653 aa15.51■□□□□ 0.07
SS18-206ENST00000577572 CD160O95971 181 aa15.51■□□□□ 0.07
SS18-206ENST00000577572 MYBL2P10244 700 aa15.51■□□□□ 0.07
SS18-206ENST00000577572 TSHRP16473 764 aa15.51■□□□□ 0.07
SS18-206ENST00000577572 CR2P20023 1033 aa15.51■□□□□ 0.07
SS18-206ENST00000577572 GJA4P35212 333 aa15.51■□□□□ 0.07
SS18-206ENST00000577572 ECT2LQ008S8 904 aa15.51■□□□□ 0.07
SS18-206ENST00000577572 CYTH1Q15438 398 aa15.51■□□□□ 0.07
SS18-206ENST00000577572 CCDC85BQ15834 202 aaPredicted RBP15.51■□□□□ 0.07
SS18-206ENST00000577572 HIF1AQ16665 826 aa15.51■□□□□ 0.07
SS18-206ENST00000577572 GAB4Q2WGN9 574 aa15.51■□□□□ 0.07
SS18-206ENST00000577572 FUT11Q495W5 492 aa15.51■□□□□ 0.07
SS18-206ENST00000577572 DNAJC21Q5F1R6 531 aaKnown RBP15.51■□□□□ 0.07
SS18-206ENST00000577572 BEND6Q5SZJ8 279 aaPredicted RBP15.51■□□□□ 0.07
SS18-206ENST00000577572 ASTLQ6HA08 431 aaPredicted RBP15.51■□□□□ 0.07
SS18-206ENST00000577572 LRRC8BQ6P9F7 803 aa15.51■□□□□ 0.07
SS18-206ENST00000577572 TRMT10CQ7L0Y3 403 aaKnown RBP15.51■□□□□ 0.07
SS18-206ENST00000577572 CSGALNACT1Q8TDX6 532 aa15.51■□□□□ 0.07
SS18-206ENST00000577572 NUDCD1Q96RS6 583 aa15.51■□□□□ 0.07
SS18-206ENST00000577572 HINFPQ9BQA5 517 aa15.51■□□□□ 0.07
SS18-206ENST00000577572 BRD9Q9H8M2 597 aa15.51■□□□□ 0.07
SS18-206ENST00000577572 C2CD4DB7Z1M9 353 aa15.5■□□□□ 0.07
SS18-206ENST00000577572 ATP8B1O43520 1251 aa15.5■□□□□ 0.07
SS18-206ENST00000577572 ATP9BO43861 1147 aa15.5■□□□□ 0.07
SS18-206ENST00000577572 SNAP91O60641 907 aa15.5■□□□□ 0.07
SS18-206ENST00000577572 TMEM63AO94886 807 aa15.5■□□□□ 0.07
SS18-206ENST00000577572 SERPINF2P08697 491 aa15.5■□□□□ 0.07
SS18-206ENST00000577572 DLDP09622 509 aaKnown RBP15.5■□□□□ 0.07
SS18-206ENST00000577572 CA4P22748 312 aa15.5■□□□□ 0.07
SS18-206ENST00000577572 MAGEA3P43357 314 aa15.5■□□□□ 0.07
SS18-206ENST00000577572 AP1S1P61966 158 aa15.5■□□□□ 0.07
SS18-206ENST00000577572 PFKPQ01813 784 aa15.5■□□□□ 0.07
SS18-206ENST00000577572 GRM3Q14832 879 aa15.5■□□□□ 0.07
SS18-206ENST00000577572 MBLAC2Q68D91 279 aa15.5■□□□□ 0.07
SS18-206ENST00000577572 FBXO38Q6PIJ6 1188 aa15.5■□□□□ 0.07
SS18-206ENST00000577572 CCNJLQ8IV13 435 aa15.5■□□□□ 0.07
SS18-206ENST00000577572 SH2D3CQ8N5H7 860 aa15.5■□□□□ 0.07
SS18-206ENST00000577572 PCDH20Q8N6Y1 951 aaKnown RBP15.5■□□□□ 0.07
SS18-206ENST00000577572 PDCD7Q8N8D1 485 aaKnown RBP15.5■□□□□ 0.07
SS18-206ENST00000577572 ARRDC2Q8TBH0 407 aa15.5■□□□□ 0.07
SS18-206ENST00000577572 USP33Q8TEY7 942 aa15.5■□□□□ 0.07
SS18-206ENST00000577572 ZNF419Q96HQ0 510 aaPredicted RBP15.5■□□□□ 0.07
SS18-206ENST00000577572 ZFYVE19Q96K21 471 aa15.5■□□□□ 0.07
SS18-206ENST00000577572 TTC25Q96NG3 672 aa15.5■□□□□ 0.07
SS18-206ENST00000577572 RBM15Q96T37 977 aaKnown RBP eCLIP15.5■□□□□ 0.07
SS18-206ENST00000577572 NAT9Q9BTE0 207 aa15.5■□□□□ 0.07
SS18-206ENST00000577572 CEP41Q9BYV8 373 aa15.5■□□□□ 0.07
SS18-206ENST00000577572 TXLNGYQ9BZA5 131 aa15.5■□□□□ 0.07
SS18-206ENST00000577572 NEUROG2Q9H2A3 272 aa15.5■□□□□ 0.07
SS18-206ENST00000577572 C8orf33Q9H7E9 229 aaPredicted RBP15.5■□□□□ 0.07
SS18-206ENST00000577572 ARNT2Q9HBZ2 717 aa15.5■□□□□ 0.07
SS18-206ENST00000577572 NYNRINQ9P2P1 1898 aaKnown RBP15.49■□□□□ 0.07
SS18-206ENST00000577572 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP15.49■□□□□ 0.07
SS18-206ENST00000577572 MAGEB16A2A368 324 aa15.49■□□□□ 0.07
SS18-206ENST00000577572 ALOX15BO15296 676 aa15.49■□□□□ 0.07
SS18-206ENST00000577572 INSIG1O15503 277 aa15.49■□□□□ 0.07
SS18-206ENST00000577572 GSRP00390 522 aa15.49■□□□□ 0.07
SS18-206ENST00000577572 GLDCP23378 1020 aa15.49■□□□□ 0.07
SS18-206ENST00000577572 GRIA2P42262 883 aa15.49■□□□□ 0.07
SS18-206ENST00000577572 TNNT3P45378 269 aaPredicted RBP15.49■□□□□ 0.07
SS18-206ENST00000577572 NPY2RP49146 381 aa15.49■□□□□ 0.07
SS18-206ENST00000577572 RHOAP61586 193 aa15.49■□□□□ 0.07
SS18-206ENST00000577572 ITKQ08881 620 aa15.49■□□□□ 0.07
SS18-206ENST00000577572 GRM2Q14416 872 aa15.49■□□□□ 0.07
SS18-206ENST00000577572 ANKRD22Q5VYY1 191 aa15.49■□□□□ 0.07
SS18-206ENST00000577572 PTCRAQ6ISU1 281 aaPredicted RBP15.49■□□□□ 0.07
SS18-206ENST00000577572 TMC3Q7Z5M5 1100 aa15.49■□□□□ 0.07
SS18-206ENST00000577572 PGBD5Q8N414 524 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms