RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 CARD16Q5EG05 197 aa21.49■■□□□ 1.03
VPS53-216ENST00000574029 ARCQ7LC44 396 aa21.49■■□□□ 1.03
VPS53-216ENST00000574029 FAM114A1Q8IWE2 563 aa21.49■■□□□ 1.03
VPS53-216ENST00000574029 APOLD1Q96LR9 279 aa21.49■■□□□ 1.03
VPS53-216ENST00000574029 FCRL3Q96P31 734 aaPredicted RBP21.49■■□□□ 1.03
VPS53-216ENST00000574029 HEPHQ9BQS7 1158 aa21.49■■□□□ 1.03
VPS53-216ENST00000574029 ATP13A1Q9HD20 1204 aa21.49■■□□□ 1.03
VPS53-216ENST00000574029 PPARGC1AQ9UBK2 798 aaKnown RBP21.49■■□□□ 1.03
VPS53-216ENST00000574029 PCDHB1Q9Y5F3 818 aa21.49■■□□□ 1.03
VPS53-216ENST00000574029 FADS3Q9Y5Q0 445 aa21.49■■□□□ 1.03
VPS53-216ENST00000574029 FHOD1Q9Y613 1164 aa21.49■■□□□ 1.03
VPS53-216ENST00000574029 TRPM6Q9BX84 2022 aa21.49■■□□□ 1.03
VPS53-216ENST00000574029 LY6G6EA0A0G2JKS1 128 aa21.48■■□□□ 1.03
VPS53-216ENST00000574029 NEMP2A6NFY4 417 aa21.48■■□□□ 1.03
VPS53-216ENST00000574029 SCAMP1O15126 338 aa21.48■■□□□ 1.03
VPS53-216ENST00000574029 ATXN7O15265 892 aaPredicted RBP21.48■■□□□ 1.03
VPS53-216ENST00000574029 OPA1O60313 960 aa21.48■■□□□ 1.03
VPS53-216ENST00000574029 LSM8O95777 96 aaKnown RBP21.48■■□□□ 1.03
VPS53-216ENST00000574029 GP1BAP07359 652 aa21.48■■□□□ 1.03
VPS53-216ENST00000574029 GNA12Q03113 381 aa21.48■■□□□ 1.03
VPS53-216ENST00000574029 C2CD6Q53TS8 623 aa21.48■■□□□ 1.03
VPS53-216ENST00000574029 KLHDC7AQ5VTJ3 777 aa21.48■■□□□ 1.03
VPS53-216ENST00000574029 KYAT3Q6YP21 454 aaKnown RBP21.48■■□□□ 1.03
VPS53-216ENST00000574029 FAM181AQ8N9Y4 354 aa21.48■■□□□ 1.03
VPS53-216ENST00000574029 FEM1CQ96JP0 617 aa21.48■■□□□ 1.03
VPS53-216ENST00000574029 CFAP57Q96MR6 1250 aa21.48■■□□□ 1.03
VPS53-216ENST00000574029 TUBGCP2Q9BSJ2 902 aa21.48■■□□□ 1.03
VPS53-216ENST00000574029 DUSP23Q9BVJ7 150 aa21.48■■□□□ 1.03
VPS53-216ENST00000574029 NAA15Q9BXJ9 866 aaKnown RBP21.48■■□□□ 1.03
VPS53-216ENST00000574029 USP29Q9HBJ7 922 aa21.48■■□□□ 1.03
VPS53-216ENST00000574029 DNAJC28Q9NX36 388 aa21.48■■□□□ 1.03
VPS53-216ENST00000574029 U3KQA8 63 aa21.48■■□□□ 1.03
VPS53-216ENST00000574029 CXorf51AA0A1B0GTR3 108 aa21.47■■□□□ 1.03
VPS53-216ENST00000574029 POM121BA6NF01 834 aa21.47■■□□□ 1.03
VPS53-216ENST00000574029 GOLGA8SH3BPF8 625 aa21.47■■□□□ 1.03
VPS53-216ENST00000574029 AP1G1O43747 822 aa21.47■■□□□ 1.03
VPS53-216ENST00000574029 CD160O95971 181 aa21.47■■□□□ 1.03
VPS53-216ENST00000574029 PAK4O96013 591 aaPredicted RBP21.47■■□□□ 1.03
VPS53-216ENST00000574029 PRKCSHP14314 528 aaPredicted RBP21.47■■□□□ 1.03
VPS53-216ENST00000574029 CCNHP51946 323 aaPredicted RBP21.47■■□□□ 1.03
VPS53-216ENST00000574029 HNRNPKP61978 463 aaKnown RBP eCLIP21.47■■□□□ 1.03
VPS53-216ENST00000574029 MAPK8IP2Q13387 824 aaPredicted RBP21.47■■□□□ 1.03
VPS53-216ENST00000574029 FZD2Q14332 565 aa21.47■■□□□ 1.03
VPS53-216ENST00000574029 ZNF542PQ5EBM4 170 aa21.47■■□□□ 1.03
VPS53-216ENST00000574029 TAF3Q5VWG9 929 aa21.47■■□□□ 1.03
VPS53-216ENST00000574029 PTAR1Q7Z6K3 402 aaPredicted RBP21.47■■□□□ 1.03
VPS53-216ENST00000574029 ZSCAN30Q86W11 494 aa21.47■■□□□ 1.03
VPS53-216ENST00000574029 FAM131BQ86XD5 332 aa21.47■■□□□ 1.03
VPS53-216ENST00000574029 PLPP6Q8IY26 295 aa21.47■■□□□ 1.03
VPS53-216ENST00000574029 LSM14AQ8ND56 463 aaKnown RBP21.47■■□□□ 1.03
VPS53-216ENST00000574029 SLC39A7Q92504 469 aa21.47■■□□□ 1.03
VPS53-216ENST00000574029 FCF1Q9Y324 198 aaKnown RBP21.47■■□□□ 1.03
VPS53-216ENST00000574029 CHD5Q8TDI0 1954 aa21.47■■□□□ 1.03
VPS53-216ENST00000574029 FAM170AA1A519 330 aa21.46■■□□□ 1.03
VPS53-216ENST00000574029 K7ESM1 405 aa21.46■■□□□ 1.03
VPS53-216ENST00000574029 RAD51BO15315 384 aa21.46■■□□□ 1.03
VPS53-216ENST00000574029 CSF2P04141 144 aa21.46■■□□□ 1.03
VPS53-216ENST00000574029 PRB1P04280 392 aa21.46■■□□□ 1.03
VPS53-216ENST00000574029 MYF5P13349 255 aa21.46■■□□□ 1.03
VPS53-216ENST00000574029 DUSP3P51452 185 aaPredicted RBP21.46■■□□□ 1.03
VPS53-216ENST00000574029 TLE3Q04726 772 aa21.46■■□□□ 1.03
VPS53-216ENST00000574029 PARS2Q7L3T8 475 aaKnown RBP21.46■■□□□ 1.03
VPS53-216ENST00000574029 NOP9Q86U38 636 aaKnown RBP21.46■■□□□ 1.03
VPS53-216ENST00000574029 MSANTD4Q8NCY6 345 aa21.46■■□□□ 1.03
VPS53-216ENST00000574029 ISG20Q96AZ6 181 aaKnown RBP21.46■■□□□ 1.03
VPS53-216ENST00000574029 LENG8Q96PV6 779 aaPredicted RBP21.46■■□□□ 1.03
VPS53-216ENST00000574029 DEPDC7Q96QD5 511 aa21.46■■□□□ 1.03
VPS53-216ENST00000574029 KLF6Q99612 283 aaPredicted RBP21.46■■□□□ 1.03
VPS53-216ENST00000574029 ACTL7AQ9Y615 435 aa21.46■■□□□ 1.03
VPS53-216ENST00000574029 SPTY2D1-AS1A0A0U1RR47 76 aa21.45■■□□□ 1.02
VPS53-216ENST00000574029 UCHL3P15374 230 aa21.45■■□□□ 1.02
VPS53-216ENST00000574029 NME1P15531 152 aaKnown RBP21.45■■□□□ 1.02
VPS53-216ENST00000574029 RABIFP47224 123 aa21.45■■□□□ 1.02
VPS53-216ENST00000574029 DNA2P51530 1060 aa21.45■■□□□ 1.02
VPS53-216ENST00000574029 NOMO3P69849 1222 aa21.45■■□□□ 1.02
VPS53-216ENST00000574029 NRG1Q02297 640 aaPredicted RBP21.45■■□□□ 1.02
VPS53-216ENST00000574029 C19orf57Q0VDD7 668 aa21.45■■□□□ 1.02
VPS53-216ENST00000574029 CCDC173Q0VFZ6 552 aa21.45■■□□□ 1.02
VPS53-216ENST00000574029 CLEC17AQ6ZS10 378 aa21.45■■□□□ 1.02
VPS53-216ENST00000574029 GPR155Q7Z3F1 870 aa21.45■■□□□ 1.02
VPS53-216ENST00000574029 SPACA3Q8IXA5 215 aa21.45■■□□□ 1.02
VPS53-216ENST00000574029 DRC7Q8IY82 874 aa21.45■■□□□ 1.02
VPS53-216ENST00000574029 CPA5Q8WXQ8 436 aa21.45■■□□□ 1.02
VPS53-216ENST00000574029 ZNF578Q96N58 590 aaPredicted RBP21.45■■□□□ 1.02
VPS53-216ENST00000574029 C1QTNF2Q9BXJ5 285 aa21.45■■□□□ 1.02
VPS53-216ENST00000574029 EVA1BQ9NVM1 165 aa21.45■■□□□ 1.02
VPS53-216ENST00000574029 CSNK1G3Q9Y6M4 447 aa21.45■■□□□ 1.02
VPS53-216ENST00000574029 COL27A1Q8IZC6 1860 aaPredicted RBP21.45■■□□□ 1.02
VPS53-216ENST00000574029 ASXL3Q9C0F0 2248 aa21.44■■□□□ 1.02
VPS53-216ENST00000574029 TEX51A0A1B0GUA7 166 aa21.44■■□□□ 1.02
VPS53-216ENST00000574029 LZTS3O60299 673 aaPredicted RBP21.44■■□□□ 1.02
VPS53-216ENST00000574029 C1QL1O75973 258 aa21.44■■□□□ 1.02
VPS53-216ENST00000574029 NEBLO76041 1014 aa21.44■■□□□ 1.02
VPS53-216ENST00000574029 DXOO77932 396 aaKnown RBP21.44■■□□□ 1.02
VPS53-216ENST00000574029 MMEP08473 750 aa21.44■■□□□ 1.02
VPS53-216ENST00000574029 ERCC5P28715 1186 aaPredicted RBP21.44■■□□□ 1.02
VPS53-216ENST00000574029 MANEALQ5VSG8 457 aa21.44■■□□□ 1.02
VPS53-216ENST00000574029 PARGQ86W56 976 aa21.44■■□□□ 1.02
VPS53-216ENST00000574029 LSMEM2Q8N112 164 aa21.44■■□□□ 1.02
VPS53-216ENST00000574029 ZNF248Q8NDW4 579 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms