RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 FARP1Q9Y4F1 1045 aaPredicted RBP15.32■□□□□ 0.04
VPS39-210ENST00000568357 WASF2Q9Y6W5 498 aa15.32■□□□□ 0.04
VPS39-210ENST00000568357 LAMA1P25391 3075 aa15.32■□□□□ 0.04
VPS39-210ENST00000568357 NUMA1Q14980 2115 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 TBC1D3DA0A087WVF3 549 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 TBC1D3IA0A087WXS9 549 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 TBC1D3EA0A087X179 549 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 TBC1D3KA0A087X1G2 549 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 TBC1D3FA6NER0 549 aaPredicted RBP15.31■□□□□ 0.04
VPS39-210ENST00000568357 EIF3CLB5ME19 914 aaKnown RBP15.31■□□□□ 0.04
VPS39-210ENST00000568357 TBC1D3LB9A6J9 549 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 KPNA3O00505 521 aaPredicted RBP15.31■□□□□ 0.04
VPS39-210ENST00000568357 FGF10O15520 208 aaPredicted RBP15.31■□□□□ 0.04
VPS39-210ENST00000568357 PLRG1O43660 514 aaKnown RBP15.31■□□□□ 0.04
VPS39-210ENST00000568357 BUB1O43683 1085 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 MFAP3LO75121 409 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 LEFTY1O75610 366 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 SYPP08247 313 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 TBC1D3HP0C7X1 549 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 HTR7P34969 479 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 RECQLP46063 649 aaPredicted RBP15.31■□□□□ 0.04
VPS39-210ENST00000568357 NOVA1P51513 510 aaKnown RBP15.31■□□□□ 0.04
VPS39-210ENST00000568357 ATXN3P54252 364 aaPredicted RBP15.31■□□□□ 0.04
VPS39-210ENST00000568357 TAS2R38P59533 333 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 GRIK2Q13002 908 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 TBX2Q13207 712 aaPredicted RBP15.31■□□□□ 0.04
VPS39-210ENST00000568357 SERINC3Q13530 473 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 PIGHQ14442 188 aaPredicted RBP15.31■□□□□ 0.04
VPS39-210ENST00000568357 SLC18A3Q16572 532 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 PPP6R3Q5H9R7 873 aaPredicted RBP15.31■□□□□ 0.04
VPS39-210ENST00000568357 PIP5KL1Q5T9C9 394 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 TBC1D3GQ6DHY5 549 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 TXNRD3NBQ6F5E7 133 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 TBC1D3CQ6IPX1 549 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 RFX8Q6ZV50 586 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 ZNF354CQ86Y25 554 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 PSTKQ8IV42 348 aaKnown RBP15.31■□□□□ 0.04
VPS39-210ENST00000568357 TBC1D3Q8IZP1 549 aaPredicted RBP15.31■□□□□ 0.04
VPS39-210ENST00000568357 MINDY1Q8N5J2 469 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 GRIN3AQ8TCU5 1115 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 VOPP1Q96AW1 172 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 ISG20Q96AZ6 181 aaKnown RBP15.31■□□□□ 0.04
VPS39-210ENST00000568357 EIF3CQ99613 913 aaKnown RBP15.31■□□□□ 0.04
VPS39-210ENST00000568357 NCAPGQ9BPX3 1015 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 HEPHQ9BQS7 1158 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 TM6SF2Q9BZW4 377 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 SLC39A8Q9C0K1 460 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 LRRC19Q9H756 370 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 ZWILCHQ9H900 591 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 TM9SF3Q9HD45 589 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 OSGEPQ9NPF4 335 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 ZNHIT6Q9NWK9 470 aaKnown RBP15.31■□□□□ 0.04
VPS39-210ENST00000568357 CWC15Q9P013 229 aaKnown RBP15.31■□□□□ 0.04
VPS39-210ENST00000568357 HECAQ9UBI9 543 aaPredicted RBP15.31■□□□□ 0.04
VPS39-210ENST00000568357 IL36AQ9UHA7 158 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 IP6K2Q9UHH9 426 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 ANAPC7Q9UJX3 599 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 DOCK4Q8N1I0 1966 aa15.31■□□□□ 0.04
VPS39-210ENST00000568357 A0A1B0GVT2 93 aa15.3■□□□□ 0.04
VPS39-210ENST00000568357 A0A1W2PPC4 97 aa15.3■□□□□ 0.04
VPS39-210ENST00000568357 SSU72P8A0A1W2PR75 194 aa15.3■□□□□ 0.04
VPS39-210ENST00000568357 WNT9AO14904 365 aa15.3■□□□□ 0.04
VPS39-210ENST00000568357 SLC7A4O43246 635 aa15.3■□□□□ 0.04
VPS39-210ENST00000568357 PRNPP04156 253 aa15.3■□□□□ 0.04
VPS39-210ENST00000568357 RARAP10276 462 aa15.3■□□□□ 0.04
VPS39-210ENST00000568357 ERCC2P18074 760 aa15.3■□□□□ 0.04
VPS39-210ENST00000568357 GKP32189 559 aa15.3■□□□□ 0.04
VPS39-210ENST00000568357 HCAR3P49019 387 aa15.3■□□□□ 0.04
VPS39-210ENST00000568357 CCR5P51681 352 aa15.3■□□□□ 0.04
VPS39-210ENST00000568357 AFF3P51826 1226 aaKnown RBP15.3■□□□□ 0.04
VPS39-210ENST00000568357 CCNHP51946 323 aaPredicted RBP15.3■□□□□ 0.04
VPS39-210ENST00000568357 GEMIN4P57678 1058 aaKnown RBP15.3■□□□□ 0.04
VPS39-210ENST00000568357 PPP2CBP62714 309 aa15.3■□□□□ 0.04
VPS39-210ENST00000568357 PPP2CAP67775 309 aa15.3■□□□□ 0.04
VPS39-210ENST00000568357 AKAP13Q12802 2813 aa15.3■□□□□ 0.04
VPS39-210ENST00000568357 TSR1Q2NL82 804 aaKnown RBP15.3■□□□□ 0.04
VPS39-210ENST00000568357 SMTNL2Q2TAL5 461 aa15.3■□□□□ 0.04
VPS39-210ENST00000568357 PARP15Q460N3 678 aa15.3■□□□□ 0.04
VPS39-210ENST00000568357 BOLA3Q53S33 107 aa15.3■□□□□ 0.04
VPS39-210ENST00000568357 PLPP6Q8IY26 295 aa15.3■□□□□ 0.04
VPS39-210ENST00000568357 NIPA2Q8N8Q9 360 aa15.3■□□□□ 0.04
VPS39-210ENST00000568357 CEP192Q8TEP8 1941 aa15.3■□□□□ 0.04
VPS39-210ENST00000568357 GATA6Q92908 595 aa15.3■□□□□ 0.04
VPS39-210ENST00000568357 CELF6Q96J87 481 aaKnown RBP15.3■□□□□ 0.04
VPS39-210ENST00000568357 TRIM5Q9C035 493 aa15.3■□□□□ 0.04
VPS39-210ENST00000568357 J3KR12 359 aa15.29■□□□□ 0.04
VPS39-210ENST00000568357 MYO1FO00160 1098 aa15.29■□□□□ 0.04
VPS39-210ENST00000568357 DAPK3O43293 454 aa15.29■□□□□ 0.04
VPS39-210ENST00000568357 LATO43561 262 aa15.29■□□□□ 0.04
VPS39-210ENST00000568357 AKR1B10O60218 316 aa15.29■□□□□ 0.04
VPS39-210ENST00000568357 GJB3O75712 270 aa15.29■□□□□ 0.04
VPS39-210ENST00000568357 TPM1P09493 284 aa15.29■□□□□ 0.04
VPS39-210ENST00000568357 NDST2P52849 883 aa15.29■□□□□ 0.04
VPS39-210ENST00000568357 SLC25A11Q02978 314 aaKnown RBP15.29■□□□□ 0.04
VPS39-210ENST00000568357 DPYSQ14117 519 aa15.29■□□□□ 0.04
VPS39-210ENST00000568357 CYTH1Q15438 398 aa15.29■□□□□ 0.04
VPS39-210ENST00000568357 DPYSL2Q16555 572 aa15.29■□□□□ 0.04
VPS39-210ENST00000568357 KIF19Q2TAC6 998 aa15.29■□□□□ 0.04
VPS39-210ENST00000568357 ATXN7L2Q5T6C5 722 aaPredicted RBP15.29■□□□□ 0.04
VPS39-210ENST00000568357 AFMIDQ63HM1 303 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms