RNA–Protein interactions for RNA: ENST00000565990.2

SF3B3-206, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-206ENST00000565990 ZNF513Q8N8E2 541 aaPredicted RBP12.85□□□□□ -0.35
SF3B3-206ENST00000565990 ACTL9Q8TC94 416 aa12.85□□□□□ -0.35
SF3B3-206ENST00000565990 MAML1Q92585 1016 aa12.85□□□□□ -0.35
SF3B3-206ENST00000565990 PTPRN2Q92932 1015 aa12.85□□□□□ -0.35
SF3B3-206ENST00000565990 MS4A14Q96JA4 679 aa12.85□□□□□ -0.35
SF3B3-206ENST00000565990 IER2Q9BTL4 223 aa12.85□□□□□ -0.35
SF3B3-206ENST00000565990 FRMD8P1Q9BZ68 369 aaPredicted RBP12.85□□□□□ -0.35
SF3B3-206ENST00000565990 CHRDQ9H2X0 955 aa12.85□□□□□ -0.35
SF3B3-206ENST00000565990 CD248Q9HCU0 757 aa12.85□□□□□ -0.35
SF3B3-206ENST00000565990 SUN2Q9UH99 717 aa12.85□□□□□ -0.35
SF3B3-206ENST00000565990 STON1Q9Y6Q2 735 aa12.85□□□□□ -0.35
SF3B3-206ENST00000565990 K7ERQ8 282 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 STK25O00506 426 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 ZNF185O15231 689 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 SMAD6O43541 496 aaKnown RBP12.84□□□□□ -0.35
SF3B3-206ENST00000565990 GPR37L1O60883 481 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 NNMTP40261 264 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 IL12RB1P42701 662 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 STK19P49842 368 aaPredicted RBP12.84□□□□□ -0.35
SF3B3-206ENST00000565990 RENBPP51606 427 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 SEC13P55735 322 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 OTUD4Q01804 1114 aaKnown RBP12.84□□□□□ -0.35
SF3B3-206ENST00000565990 C2orf54Q08AI8 447 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 SLC10A7Q0GE19 358 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 CUL1Q13616 776 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 PRKD1Q15139 912 aaPredicted RBP12.84□□□□□ -0.35
SF3B3-206ENST00000565990 DLG2Q15700 870 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 CCNG2Q16589 344 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 SPDYCQ5MJ68 293 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 TMCO4Q5TGY1 634 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 TIGD7Q6NT04 549 aaPredicted RBP12.84□□□□□ -0.35
SF3B3-206ENST00000565990 DRICH1Q6PGQ1 229 aaPredicted RBP12.84□□□□□ -0.35
SF3B3-206ENST00000565990 SYT13Q7L8C5 426 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 SPATS2Q86XZ4 545 aaKnown RBP12.84□□□□□ -0.35
SF3B3-206ENST00000565990 SPEM1Q8N4L4 309 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 ALLCQ8N6M5 410 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 FLCNQ8NFG4 579 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 RPLP0P6Q8NHW5 317 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 SLC35B2Q8TB61 432 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 MAIP1Q8WWC4 291 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 PBXIP1Q96AQ6 731 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 RUFY1Q96T51 708 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 LGMNQ99538 433 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 IL12RB2Q99665 862 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 CEP44Q9C0F1 390 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 MFSD1Q9H3U5 465 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 USP29Q9HBJ7 922 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 C11orf16Q9NQ32 467 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 SLC25A13Q9UJS0 675 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 MMP17Q9ULZ9 603 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 DRG1Q9Y295 367 aaKnown RBP12.84□□□□□ -0.35
SF3B3-206ENST00000565990 R3HDM2Q9Y2K5 976 aaKnown RBP12.84□□□□□ -0.35
SF3B3-206ENST00000565990 ACTL7AQ9Y615 435 aa12.84□□□□□ -0.35
SF3B3-206ENST00000565990 ATXN2Q99700 1313 aaKnown RBP12.84□□□□□ -0.35
SF3B3-206ENST00000565990 A0A1W2PQF6 199 aa12.83□□□□□ -0.36
SF3B3-206ENST00000565990 BCLAF3A2AJT9 711 aaKnown RBP12.83□□□□□ -0.36
SF3B3-206ENST00000565990 TTC34A8MYJ7 566 aa12.83□□□□□ -0.36
SF3B3-206ENST00000565990 BHMG1C9JSJ3 638 aaPredicted RBP12.83□□□□□ -0.36
SF3B3-206ENST00000565990 SGK1O00141 431 aa12.83□□□□□ -0.36
SF3B3-206ENST00000565990 PPP1R12AO14974 1030 aaPredicted RBP12.83□□□□□ -0.36
SF3B3-206ENST00000565990 MAP3K6O95382 1288 aa12.83□□□□□ -0.36
SF3B3-206ENST00000565990 KLF8O95600 359 aaPredicted RBP12.83□□□□□ -0.36
SF3B3-206ENST00000565990 CCNB1P14635 433 aa12.83□□□□□ -0.36
SF3B3-206ENST00000565990 CSNK1DP48730 415 aa12.83□□□□□ -0.36
SF3B3-206ENST00000565990 ST8SIA6P61647 398 aa12.83□□□□□ -0.36
SF3B3-206ENST00000565990 IFI35P80217 286 aaPredicted RBP12.83□□□□□ -0.36
SF3B3-206ENST00000565990 HNRNPA1L2Q32P51 320 aaKnown RBP12.83□□□□□ -0.36
SF3B3-206ENST00000565990 C9orf64Q5T6V5 341 aa12.83□□□□□ -0.36
SF3B3-206ENST00000565990 MARC1Q5VT66 337 aa12.83□□□□□ -0.36
SF3B3-206ENST00000565990 SDE2Q6IQ49 451 aa12.83□□□□□ -0.36
SF3B3-206ENST00000565990 PKN3Q6P5Z2 889 aa12.83□□□□□ -0.36
SF3B3-206ENST00000565990 LRIG3Q6UXM1 1119 aa12.83□□□□□ -0.36
SF3B3-206ENST00000565990 Q6ZS52 159 aa12.83□□□□□ -0.36
SF3B3-206ENST00000565990 ZC3H18Q86VM9 953 aaKnown RBP12.83□□□□□ -0.36
SF3B3-206ENST00000565990 CCDC13Q8IYE1 715 aa12.83□□□□□ -0.36
SF3B3-206ENST00000565990 CHPFQ8IZ52 775 aa12.83□□□□□ -0.36
SF3B3-206ENST00000565990 FBXL6Q8N531 539 aa12.83□□□□□ -0.36
SF3B3-206ENST00000565990 ATPAF2Q8N5M1 289 aa12.83□□□□□ -0.36
SF3B3-206ENST00000565990 CCDC33Q8N5R6 958 aa12.83□□□□□ -0.36
SF3B3-206ENST00000565990 ATP11CQ8NB49 1132 aa12.83□□□□□ -0.36
SF3B3-206ENST00000565990 TXNDC5Q8NBS9 432 aaKnown RBP12.83□□□□□ -0.36
SF3B3-206ENST00000565990 LRRN4Q8WUT4 740 aa12.83□□□□□ -0.36
SF3B3-206ENST00000565990 TFB1MQ8WVM0 346 aaKnown RBP12.83□□□□□ -0.36
SF3B3-206ENST00000565990 NKD2Q969F2 451 aaPredicted RBP12.83□□□□□ -0.36
SF3B3-206ENST00000565990 VOPP1Q96AW1 172 aa12.83□□□□□ -0.36
SF3B3-206ENST00000565990 PSKH2Q96QS6 385 aa12.83□□□□□ -0.36
SF3B3-206ENST00000565990 NAP1L3Q99457 506 aaPredicted RBP12.83□□□□□ -0.36
SF3B3-206ENST00000565990 LRRC1Q9BTT6 524 aa12.83□□□□□ -0.36
SF3B3-206ENST00000565990 HOMER3Q9NSC5 361 aa12.83□□□□□ -0.36
SF3B3-206ENST00000565990 UBA2Q9UBT2 640 aaPredicted RBP12.83□□□□□ -0.36
SF3B3-206ENST00000565990 AMACRQ9UHK6 382 aa12.83□□□□□ -0.36
SF3B3-206ENST00000565990 GOLGA6CA6NDK9 693 aa12.82□□□□□ -0.36
SF3B3-206ENST00000565990 AGPSO00116 658 aa12.82□□□□□ -0.36
SF3B3-206ENST00000565990 MCF2LO15068 1137 aa12.82□□□□□ -0.36
SF3B3-206ENST00000565990 MTSS1O43312 755 aa12.82□□□□□ -0.36
SF3B3-206ENST00000565990 LIASO43766 372 aa12.82□□□□□ -0.36
SF3B3-206ENST00000565990 PAPSS2O95340 614 aaPredicted RBP12.82□□□□□ -0.36
SF3B3-206ENST00000565990 DCNP07585 359 aaKnown RBP12.82□□□□□ -0.36
SF3B3-206ENST00000565990 GOLGA6DP0CG33 693 aa12.82□□□□□ -0.36
SF3B3-206ENST00000565990 PRKCHP24723 683 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms