RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 DCP2Q8IU60 420 aaKnown RBP17.46■□□□□ 0.38
CLN3-216ENST00000565316 EMC1Q8N766 993 aa17.46■□□□□ 0.38
CLN3-216ENST00000565316 OR4C6Q8NH72 309 aa17.46■□□□□ 0.38
CLN3-216ENST00000565316 ENOX1Q8TC92 643 aaKnown RBP17.46■□□□□ 0.38
CLN3-216ENST00000565316 ISG20Q96AZ6 181 aaKnown RBP17.46■□□□□ 0.38
CLN3-216ENST00000565316 MYOCQ99972 504 aa17.46■□□□□ 0.38
CLN3-216ENST00000565316 RAB6CQ9H0N0 254 aa17.46■□□□□ 0.38
CLN3-216ENST00000565316 OSBPL2Q9H1P3 480 aa17.46■□□□□ 0.38
CLN3-216ENST00000565316 METTL5Q9NRN9 209 aaKnown RBP17.46■□□□□ 0.38
CLN3-216ENST00000565316 UCKL1Q9NWZ5 548 aa17.46■□□□□ 0.38
CLN3-216ENST00000565316 TAB2Q9NYJ8 693 aa17.46■□□□□ 0.38
CLN3-216ENST00000565316 OR12D3Q9UGF7 316 aa17.46■□□□□ 0.38
CLN3-216ENST00000565316 AP1G1O43747 822 aa17.45■□□□□ 0.38
CLN3-216ENST00000565316 PIAS2O75928 621 aa17.45■□□□□ 0.38
CLN3-216ENST00000565316 GFPT2O94808 682 aa17.45■□□□□ 0.38
CLN3-216ENST00000565316 GIMD1P0DJR0 217 aa17.45■□□□□ 0.38
CLN3-216ENST00000565316 ADRB3P13945 408 aa17.45■□□□□ 0.38
CLN3-216ENST00000565316 L1CAMP32004 1257 aa17.45■□□□□ 0.38
CLN3-216ENST00000565316 ETFBP38117 255 aa17.45■□□□□ 0.38
CLN3-216ENST00000565316 CLDN2P57739 230 aa17.45■□□□□ 0.38
CLN3-216ENST00000565316 RPS21P63220 83 aaKnown RBP17.45■□□□□ 0.38
CLN3-216ENST00000565316 ATP11AP98196 1134 aa17.45■□□□□ 0.38
CLN3-216ENST00000565316 E2F1Q01094 437 aa17.45■□□□□ 0.38
CLN3-216ENST00000565316 FGL2Q14314 439 aa17.45■□□□□ 0.38
CLN3-216ENST00000565316 KIAA1161Q6NSJ0 714 aa17.45■□□□□ 0.38
CLN3-216ENST00000565316 DRC7Q8IY82 874 aa17.45■□□□□ 0.38
CLN3-216ENST00000565316 SLC22A18ASQ8N1D0 253 aa17.45■□□□□ 0.38
CLN3-216ENST00000565316 DCBLD1Q8N8Z6 715 aa17.45■□□□□ 0.38
CLN3-216ENST00000565316 RXFP2Q8WXD0 754 aa17.45■□□□□ 0.38
CLN3-216ENST00000565316 CENPIQ92674 756 aaPredicted RBP17.45■□□□□ 0.38
CLN3-216ENST00000565316 LRIG1Q96JA1 1093 aa17.45■□□□□ 0.38
CLN3-216ENST00000565316 SLC17A9Q9BYT1 436 aa17.45■□□□□ 0.38
CLN3-216ENST00000565316 NEU3Q9UQ49 428 aa17.45■□□□□ 0.38
CLN3-216ENST00000565316 FADS3Q9Y5Q0 445 aa17.45■□□□□ 0.38
CLN3-216ENST00000565316 ASXL3Q9C0F0 2248 aa17.44■□□□□ 0.38
CLN3-216ENST00000565316 C2CD4BA6NLJ0 364 aa17.44■□□□□ 0.38
CLN3-216ENST00000565316 RHOQP17081 205 aa17.44■□□□□ 0.38
CLN3-216ENST00000565316 SOX5P35711 763 aa17.44■□□□□ 0.38
CLN3-216ENST00000565316 ACVRL1P37023 503 aa17.44■□□□□ 0.38
CLN3-216ENST00000565316 PTPN9P43378 593 aa17.44■□□□□ 0.38
CLN3-216ENST00000565316 MAPKAPK2P49137 400 aa17.44■□□□□ 0.38
CLN3-216ENST00000565316 CCNHP51946 323 aaPredicted RBP17.44■□□□□ 0.38
CLN3-216ENST00000565316 INSM1Q01101 510 aaPredicted RBP17.44■□□□□ 0.38
CLN3-216ENST00000565316 C15orf59Q2T9L4 293 aaPredicted RBP17.44■□□□□ 0.38
CLN3-216ENST00000565316 ARL13BQ3SXY8 428 aa17.44■□□□□ 0.38
CLN3-216ENST00000565316 Q6ZSR6 202 aa17.44■□□□□ 0.38
CLN3-216ENST00000565316 ZSCAN30Q86W11 494 aa17.44■□□□□ 0.38
CLN3-216ENST00000565316 VOPP1Q96AW1 172 aa17.44■□□□□ 0.38
CLN3-216ENST00000565316 FEM1CQ96JP0 617 aa17.44■□□□□ 0.38
CLN3-216ENST00000565316 BMFQ96LC9 184 aa17.44■□□□□ 0.38
CLN3-216ENST00000565316 CALN1Q9BXU9 219 aa17.44■□□□□ 0.38
CLN3-216ENST00000565316 NDFIP2Q9NV92 336 aa17.44■□□□□ 0.38
CLN3-216ENST00000565316 TMEM248Q9NWD8 314 aa17.44■□□□□ 0.38
CLN3-216ENST00000565316 FCF1Q9Y324 198 aaKnown RBP17.44■□□□□ 0.38
CLN3-216ENST00000565316 DAAM1Q9Y4D1 1078 aa17.44■□□□□ 0.38
CLN3-216ENST00000565316 GCN1Q92616 2671 aaKnown RBP17.43■□□□□ 0.38
CLN3-216ENST00000565316 A6NNZ2 444 aa17.43■□□□□ 0.38
CLN3-216ENST00000565316 FAM72CH0Y354 149 aa17.43■□□□□ 0.38
CLN3-216ENST00000565316 CKMT1AP12532 417 aa17.43■□□□□ 0.38
CLN3-216ENST00000565316 SDC4P31431 198 aa17.43■□□□□ 0.38
CLN3-216ENST00000565316 KLK7P49862 253 aa17.43■□□□□ 0.38
CLN3-216ENST00000565316 DNA2P51530 1060 aa17.43■□□□□ 0.38
CLN3-216ENST00000565316 GSCP56915 257 aaPredicted RBP17.43■□□□□ 0.38
CLN3-216ENST00000565316 PTP4A2Q12974 167 aa17.43■□□□□ 0.38
CLN3-216ENST00000565316 KRT31Q15323 416 aa17.43■□□□□ 0.38
CLN3-216ENST00000565316 FAM72AQ5TYM5 149 aa17.43■□□□□ 0.38
CLN3-216ENST00000565316 FAM72DQ6L9T8 149 aa17.43■□□□□ 0.38
CLN3-216ENST00000565316 KYAT3Q6YP21 454 aaKnown RBP17.43■□□□□ 0.38
CLN3-216ENST00000565316 TRIM72Q6ZMU5 477 aa17.43■□□□□ 0.38
CLN3-216ENST00000565316 PARS2Q7L3T8 475 aaKnown RBP17.43■□□□□ 0.38
CLN3-216ENST00000565316 STRADAQ7RTN6 431 aa17.43■□□□□ 0.38
CLN3-216ENST00000565316 FAM72BQ86X60 149 aa17.43■□□□□ 0.38
CLN3-216ENST00000565316 JOSD2Q8TAC2 188 aa17.43■□□□□ 0.38
CLN3-216ENST00000565316 ARHGEF2Q92974 986 aaKnown RBP17.43■□□□□ 0.38
CLN3-216ENST00000565316 LENG8Q96PV6 779 aaPredicted RBP17.43■□□□□ 0.38
CLN3-216ENST00000565316 C1QTNF2Q9BXJ5 285 aa17.43■□□□□ 0.38
CLN3-216ENST00000565316 MAGEH1Q9H213 219 aa17.43■□□□□ 0.38
CLN3-216ENST00000565316 VPS16Q9H269 839 aa17.43■□□□□ 0.38
CLN3-216ENST00000565316 CLCA2Q9UQC9 943 aa17.43■□□□□ 0.38
CLN3-216ENST00000565316 ACTL7AQ9Y615 435 aa17.43■□□□□ 0.38
CLN3-216ENST00000565316 KALRNO60229 2985 aa17.42■□□□□ 0.38
CLN3-216ENST00000565316 POM121BA6NF01 834 aa17.42■□□□□ 0.38
CLN3-216ENST00000565316 EPHB6O15197 1021 aa17.42■□□□□ 0.38
CLN3-216ENST00000565316 RAD51BO15315 384 aa17.42■□□□□ 0.38
CLN3-216ENST00000565316 TLX3O43711 291 aaPredicted RBP17.42■□□□□ 0.38
CLN3-216ENST00000565316 PAK4O96013 591 aaPredicted RBP17.42■□□□□ 0.38
CLN3-216ENST00000565316 GSRP00390 522 aa17.42■□□□□ 0.38
CLN3-216ENST00000565316 UNGP13051 313 aaPredicted RBP17.42■□□□□ 0.38
CLN3-216ENST00000565316 EIF2S3P41091 472 aaKnown RBP17.42■□□□□ 0.38
CLN3-216ENST00000565316 HDAC4P56524 1084 aa17.42■□□□□ 0.38
CLN3-216ENST00000565316 GEMIN4P57678 1058 aaKnown RBP17.42■□□□□ 0.38
CLN3-216ENST00000565316 POLR2FP61218 127 aaKnown RBP17.42■□□□□ 0.38
CLN3-216ENST00000565316 SEMG2Q02383 582 aa17.42■□□□□ 0.38
CLN3-216ENST00000565316 FZD2Q14332 565 aa17.42■□□□□ 0.38
CLN3-216ENST00000565316 ACAP1Q15027 740 aa17.42■□□□□ 0.38
CLN3-216ENST00000565316 CDO1Q16878 200 aa17.42■□□□□ 0.38
CLN3-216ENST00000565316 RWDD4Q6NW29 188 aaKnown RBP17.42■□□□□ 0.38
CLN3-216ENST00000565316 CLEC17AQ6ZS10 378 aa17.42■□□□□ 0.38
CLN3-216ENST00000565316 FAM181AQ8N9Y4 354 aa17.42■□□□□ 0.38
CLN3-216ENST00000565316 SLC30A5Q8TAD4 765 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms