RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 PPP2CAP67775 309 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 KRT83P78385 493 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 BNC1Q01954 994 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 CNTN1Q12860 1018 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 KRT81Q14533 505 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 STARD3Q14849 445 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 PTPRRQ15256 657 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 SPA17Q15506 151 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 PARP15Q460N3 678 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 USP39Q53GS9 565 aaKnown RBP9.38□□□□□ -0.91
VPS35-206ENST00000565228 ARSIQ5FYB1 569 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 PLA2G2CQ5R387 149 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 PIP5KL1Q5T9C9 394 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 AGBL4Q5VU57 503 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 ZNF776Q68DI1 518 aaPredicted RBP9.38□□□□□ -0.91
VPS35-206ENST00000565228 SLC9A4Q6AI14 798 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 KDM7AQ6ZMT4 941 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 NT5DC3Q86UY8 548 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 CCDC117Q8IWD4 279 aaPredicted RBP9.38□□□□□ -0.91
VPS35-206ENST00000565228 TSEN2Q8NCE0 465 aaKnown RBP9.38□□□□□ -0.91
VPS35-206ENST00000565228 C1orf216Q8TAB5 229 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 PIP4K2CQ8TBX8 421 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 PRCCQ92733 491 aaPredicted RBP9.38□□□□□ -0.91
VPS35-206ENST00000565228 FUBP1Q96AE4 644 aaKnown RBP9.38□□□□□ -0.91
VPS35-206ENST00000565228 SMIM14Q96QK8 99 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 ZNF670Q9BS34 389 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 ANP32EQ9BTT0 268 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 ARRDC1-AS1Q9H2J1 176 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 RETREG1Q9H6L5 497 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 DTLQ9NZJ0 730 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 GGT7Q9UJ14 662 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 TMEM131Q92545 1883 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 TRPM6Q9BX84 2022 aa9.38□□□□□ -0.91
VPS35-206ENST00000565228 MACROD2A1Z1Q3 448 aa9.37□□□□□ -0.91
VPS35-206ENST00000565228 LRRD1A4D1F6 860 aa9.37□□□□□ -0.91
VPS35-206ENST00000565228 LEFTY1O75610 366 aa9.37□□□□□ -0.91
VPS35-206ENST00000565228 PALMO75781 387 aa9.37□□□□□ -0.91
VPS35-206ENST00000565228 PIGNO95427 931 aa9.37□□□□□ -0.91
VPS35-206ENST00000565228 FTCDO95954 541 aa9.37□□□□□ -0.91
VPS35-206ENST00000565228 KRT1P04264 644 aa9.37□□□□□ -0.91
VPS35-206ENST00000565228 IGHV4-34P06331 123 aa9.37□□□□□ -0.91
VPS35-206ENST00000565228 CR2P20023 1033 aa9.37□□□□□ -0.91
VPS35-206ENST00000565228 CD6P30203 668 aa9.37□□□□□ -0.91
VPS35-206ENST00000565228 ETFBP38117 255 aa9.37□□□□□ -0.91
VPS35-206ENST00000565228 ABL2P42684 1182 aa9.37□□□□□ -0.91
VPS35-206ENST00000565228 SPEM2Q0P670 501 aa9.37□□□□□ -0.91
VPS35-206ENST00000565228 GALNT2Q10471 571 aa9.37□□□□□ -0.91
VPS35-206ENST00000565228 FGL2Q14314 439 aa9.37□□□□□ -0.91
VPS35-206ENST00000565228 ELAVL3Q14576 367 aaKnown RBP9.37□□□□□ -0.91
VPS35-206ENST00000565228 SF3A2Q15428 464 aaKnown RBP9.37□□□□□ -0.91
VPS35-206ENST00000565228 HADHQ16836 314 aaKnown RBP9.37□□□□□ -0.91
VPS35-206ENST00000565228 KCTD19Q17RG1 926 aaPredicted RBP9.37□□□□□ -0.91
VPS35-206ENST00000565228 CARD16Q5EG05 197 aa9.37□□□□□ -0.91
VPS35-206ENST00000565228 LRRC73Q5JTD7 316 aa9.37□□□□□ -0.91
VPS35-206ENST00000565228 LRRC38Q5VT99 294 aa9.37□□□□□ -0.91
VPS35-206ENST00000565228 PEAR1Q5VY43 1037 aaPredicted RBP9.37□□□□□ -0.91
VPS35-206ENST00000565228 ZC3H14Q6PJT7 736 aaKnown RBP9.37□□□□□ -0.91
VPS35-206ENST00000565228 CEP68Q76N32 757 aa9.37□□□□□ -0.91
VPS35-206ENST00000565228 KCTD6Q8NC69 237 aa9.37□□□□□ -0.91
VPS35-206ENST00000565228 GRIN3AQ8TCU5 1115 aa9.37□□□□□ -0.91
VPS35-206ENST00000565228 GPR174Q9BXC1 333 aa9.37□□□□□ -0.91
VPS35-206ENST00000565228 CALN1Q9BXU9 219 aa9.37□□□□□ -0.91
VPS35-206ENST00000565228 CEP44Q9C0F1 390 aa9.37□□□□□ -0.91
VPS35-206ENST00000565228 C10orf88Q9H8K7 445 aa9.37□□□□□ -0.91
VPS35-206ENST00000565228 FBXL12Q9NXK8 326 aa9.37□□□□□ -0.91
VPS35-206ENST00000565228 RCOR3Q9P2K3 495 aaPredicted RBP9.37□□□□□ -0.91
VPS35-206ENST00000565228 EVLQ9UI08 416 aaPredicted RBP9.37□□□□□ -0.91
VPS35-206ENST00000565228 IPO11Q9UI26 975 aaKnown RBP9.37□□□□□ -0.91
VPS35-206ENST00000565228 ASCC3Q8N3C0 2202 aaKnown RBP9.37□□□□□ -0.91
VPS35-206ENST00000565228 SPEGQ15772 3267 aa9.37□□□□□ -0.91
VPS35-206ENST00000565228 hCG_1818297A0A087WSY0 165 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 TCRBV7S2A1N4TA0A589 114 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 BCLAF3A2AJT9 711 aaKnown RBP9.36□□□□□ -0.91
VPS35-206ENST00000565228 METTL12A8MUP2 240 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 DAPK3O43293 454 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 GDF9O60383 454 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 GSRP00390 522 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 IL1BP01584 269 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 PRKCGP05129 697 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 KRT7P08729 469 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 PYGMP11217 842 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 CTNNA2P26232 953 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 CTNNA1P35221 906 aaKnown RBP9.36□□□□□ -0.91
VPS35-206ENST00000565228 ARL4AP40617 200 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 SLC1A1P43005 524 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 DNA2P51530 1060 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 ADPRHP54922 357 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 GSDMDP57764 484 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 MAXP61244 160 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 SEMG2Q02383 582 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 RPL6Q02878 288 aaKnown RBP9.36□□□□□ -0.91
VPS35-206ENST00000565228 ZNF33AQ06730 810 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 IL10RBQ08334 325 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 ZBTB17Q13105 803 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 PDK2Q15119 407 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 MYLK3Q32MK0 819 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 LAIR1Q6GTX8 287 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 RETSATQ6NUM9 610 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 NCEH1Q6PIU2 408 aa9.36□□□□□ -0.91
VPS35-206ENST00000565228 TMCO3Q6UWJ1 677 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms