RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 SLC25A23Q9BV35 468 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 CCDC106Q9BWC9 280 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 ALG9Q9H6U8 611 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 COQ10BQ9H8M1 238 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 FETUBQ9UGM5 382 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 ADAM28Q9UKQ2 775 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 COQ4Q9Y3A0 265 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 ATRNL1Q5VV63 1379 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 C19orf81C9J6K1 198 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 NDUFS3O75489 264 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 FKBP9O95302 570 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 LDLRP01130 860 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 JAG1P78504 1218 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 ZNF460Q14592 562 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 FAM45BPQ6NSW5 357 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 PPP4R4Q6NUP7 873 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 FKBP9P1Q75LS8 142 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 CAMK1DQ8IU85 385 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 SPPL2CQ8IUH8 684 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 THEM5Q8N1Q8 247 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 DNAJB14Q8TBM8 379 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 PPP1R13LQ8WUF5 828 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 BTBD9Q96Q07 612 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 APOL5Q9BWW9 433 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 ATP6V1HQ9UI12 483 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 BTRCQ9Y297 605 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 ZNF541Q9H0D2 1346 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 MAGEB16A2A368 324 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 YDJCA8MPS7 323 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 ACKR2O00590 384 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 IDH3BO43837 385 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 CD4P01730 458 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 IMPDH2P12268 514 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 FCGR1AP12314 374 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 RECQLP46063 649 aaPredicted RBP7.2□□□□□ -1.26
USP3-210ENST00000559192 ATXN1P54253 815 aaKnown RBP7.2□□□□□ -1.26
USP3-210ENST00000559192 POU4F1Q01851 419 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 ATP6AP1LQ52LC2 224 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 PLEKHG4Q58EX7 1191 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 PITRM1Q5JRX3 1037 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 TMEM63BQ5T3F8 832 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 NBPF12Q5TAG4 269 aaPredicted RBP7.2□□□□□ -1.26
USP3-210ENST00000559192 AGAP2Q99490 1192 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 TINF2Q9BSI4 451 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 OSBPL6Q9BZF3 934 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 REXO4Q9GZR2 422 aaKnown RBP7.2□□□□□ -1.26
USP3-210ENST00000559192 ST6GALNAC4Q9H4F1 302 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 CCDC154A6NI56 674 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 SLC15A5A6NIM6 579 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 C9JVG2 144 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 MFSD11O43934 449 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 HS6ST1O60243 411 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 METTL18O95568 372 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 RBP1P09455 135 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 UBA1P22314 1058 aaKnown RBP7.2□□□□□ -1.26
USP3-210ENST00000559192 GSSP48637 474 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 NPY2RP49146 381 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 SLC7A2P52569 658 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 THOP1P52888 689 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 TCEAL1Q15170 157 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 EEF1DP3Q658K8 133 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 REP15Q6BDI9 236 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 FAM180AQ6UWF9 173 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 ABRAXAS1Q6UWZ7 409 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 CDHR3Q6ZTQ4 885 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 SAPCD2Q86UD0 394 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 P3H2Q8IVL5 708 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 OR6J1Q8NGC5 347 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 UBASH3BQ8TF42 649 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 SNX19Q92543 992 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 OTULINQ96BN8 352 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 P2RY11Q96G91 374 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 TCF12Q99081 682 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 MRPL45Q9BRJ2 306 aaKnown RBP7.2□□□□□ -1.26
USP3-210ENST00000559192 SPRTNQ9H040 489 aaPredicted RBP7.2□□□□□ -1.26
USP3-210ENST00000559192 CATSPERBQ9H7T0 1116 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 TRIM45Q9H8W5 580 aaPredicted RBP7.2□□□□□ -1.26
USP3-210ENST00000559192 CASS4Q9NQ75 786 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 HMGXB4Q9UGU5 601 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 TIMM13Q9Y5L4 95 aaPredicted RBP7.2□□□□□ -1.26
USP3-210ENST00000559192 DGKBQ9Y6T7 804 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 CCDC88AQ3V6T2 1871 aa7.2□□□□□ -1.26
USP3-210ENST00000559192 SYNDIG1LA6NDD5 238 aa7.19□□□□□ -1.26
USP3-210ENST00000559192 TK2O00142 265 aa7.19□□□□□ -1.26
USP3-210ENST00000559192 PRLP01236 227 aa7.19□□□□□ -1.26
USP3-210ENST00000559192 ASPAP45381 313 aa7.19□□□□□ -1.26
USP3-210ENST00000559192 IREB2P48200 963 aaKnown RBP7.19□□□□□ -1.26
USP3-210ENST00000559192 SERPINH1P50454 418 aaKnown RBP7.19□□□□□ -1.26
USP3-210ENST00000559192 SLC5A3P53794 718 aa7.19□□□□□ -1.26
USP3-210ENST00000559192 HPCAP84074 193 aa7.19□□□□□ -1.26
USP3-210ENST00000559192 DPYSQ14117 519 aa7.19□□□□□ -1.26
USP3-210ENST00000559192 FRG1Q14331 258 aaKnown RBP7.19□□□□□ -1.26
USP3-210ENST00000559192 KCNJ11Q14654 390 aa7.19□□□□□ -1.26
USP3-210ENST00000559192 DLG2Q15700 870 aa7.19□□□□□ -1.26
USP3-210ENST00000559192 TSC22D1Q15714 1073 aa7.19□□□□□ -1.26
USP3-210ENST00000559192 AKIRIN2Q53H80 203 aa7.19□□□□□ -1.26
USP3-210ENST00000559192 TMEM198Q66K66 360 aa7.19□□□□□ -1.26
USP3-210ENST00000559192 TAF2Q6P1X5 1199 aa7.19□□□□□ -1.26
USP3-210ENST00000559192 NEK10Q6ZWH5 1172 aa7.19□□□□□ -1.26
USP3-210ENST00000559192 RELL1Q8IUW5 271 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms