RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 HDDC3Q8N4P3 179 aa13.82□□□□□ -0.2
SHMT2-228ENST00000557302 PQLC3Q8N755 202 aa13.82□□□□□ -0.2
SHMT2-228ENST00000557302 CHST14Q8NCH0 376 aa13.82□□□□□ -0.2
SHMT2-228ENST00000557302 TMIEQ8NEW7 156 aa13.82□□□□□ -0.2
SHMT2-228ENST00000557302 OR2AP1Q8NGE2 309 aa13.82□□□□□ -0.2
SHMT2-228ENST00000557302 GRIN3AQ8TCU5 1115 aa13.82□□□□□ -0.2
SHMT2-228ENST00000557302 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-228ENST00000557302 RNF25Q96BH1 459 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-228ENST00000557302 GDAP1L1Q96MZ0 367 aa13.82□□□□□ -0.2
SHMT2-228ENST00000557302 RNF157Q96PX1 679 aa13.82□□□□□ -0.2
SHMT2-228ENST00000557302 OMDQ99983 421 aa13.82□□□□□ -0.2
SHMT2-228ENST00000557302 HEPHQ9BQS7 1158 aa13.82□□□□□ -0.2
SHMT2-228ENST00000557302 GPR174Q9BXC1 333 aa13.82□□□□□ -0.2
SHMT2-228ENST00000557302 MAK16Q9BXY0 300 aaKnown RBP13.82□□□□□ -0.2
SHMT2-228ENST00000557302 BTBD1Q9H0C5 482 aa13.82□□□□□ -0.2
SHMT2-228ENST00000557302 IL36AQ9UHA7 158 aa13.82□□□□□ -0.2
SHMT2-228ENST00000557302 SARDHQ9UL12 918 aa13.82□□□□□ -0.2
SHMT2-228ENST00000557302 FZD4Q9ULV1 537 aa13.82□□□□□ -0.2
SHMT2-228ENST00000557302 WASF2Q9Y6W5 498 aa13.82□□□□□ -0.2
SHMT2-228ENST00000557302 FAM186AA6NE01 2351 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 ABCA7Q8IZY2 2146 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 A0A0U1RQJ8 604 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 GRID2IPA4D2P6 1211 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 KPNA3O00505 521 aaPredicted RBP13.81□□□□□ -0.2
SHMT2-228ENST00000557302 PALMO75781 387 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 EPN2O95208 641 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 IGSF6O95976 241 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 CTSLP07711 333 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 CCDC175P0C221 793 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 RFTN1Q14699 578 aaPredicted RBP13.81□□□□□ -0.2
SHMT2-228ENST00000557302 CYTH1Q15438 398 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 ARSIQ5FYB1 569 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 ATXN7L2Q5T6C5 722 aaPredicted RBP13.81□□□□□ -0.2
SHMT2-228ENST00000557302 TMCO4Q5TGY1 634 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 LYSMD4Q5XG99 296 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 MFSD7Q6UXD7 560 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 ARMCX6Q7L4S7 300 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 CYP2U1Q7Z449 544 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 RFX6Q8HWS3 928 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 LRRC49Q8IUZ0 686 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 SYCE1Q8N0S2 351 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 AADATQ8N5Z0 425 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 DEFB119Q8N690 84 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 LRRC57Q8N9N7 239 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 PPP1R16AQ96I34 528 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 ZNF599Q96NL3 588 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 ZDHHC6Q9H6R6 413 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 SGK2Q9HBY8 427 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 DYRK4Q9NR20 520 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 SERGEFQ9UGK8 458 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 PCDHGA5Q9Y5G8 931 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 PLXND1Q9Y4D7 1925 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 PTPRZ1P23471 2315 aaPredicted RBP13.81□□□□□ -0.2
SHMT2-228ENST00000557302 NUP205Q92621 2012 aa13.81□□□□□ -0.2
SHMT2-228ENST00000557302 GVINP1Q7Z2Y8 2422 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 KRIT1O00522 736 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 APOL1O14791 398 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 KRT86O43790 486 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 LEFTY1O75610 366 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 ZRANB2O95218 330 aaKnown RBP eCLIP13.8□□□□□ -0.2
SHMT2-228ENST00000557302 POP4O95707 220 aaKnown RBP13.8□□□□□ -0.2
SHMT2-228ENST00000557302 SEMA4FO95754 770 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 PTMAP06454 111 aaKnown RBP13.8□□□□□ -0.2
SHMT2-228ENST00000557302 ZFXP17010 805 aaPredicted RBP13.8□□□□□ -0.2
SHMT2-228ENST00000557302 MX2P20592 715 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 CTNNA2P26232 953 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 ACSL1P33121 698 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 CTNNA1P35221 906 aaKnown RBP13.8□□□□□ -0.2
SHMT2-228ENST00000557302 PTGER3P43115 390 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 MARCKSL1P49006 195 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 METAP1P53582 386 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 CREB5Q02930 508 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 GBE1Q04446 702 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 RAD51Q06609 339 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 ZNF33AQ06730 810 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 GALNT2Q10471 571 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 CNTN1Q12860 1018 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 MYLK3Q32MK0 819 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 POM121L1PQ3SYA9 428 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 SLC9A4Q6AI14 798 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 SPOCD1Q6ZMY3 1216 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 CCDC50Q8IVM0 306 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 RCOR2Q8IZ40 523 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 RNF10Q8N5U6 811 aaKnown RBP13.8□□□□□ -0.2
SHMT2-228ENST00000557302 CADM4Q8NFZ8 388 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 OR6K2Q8NGY2 324 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 EXD1Q8NHP7 514 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 NSMCE1Q8WV22 266 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 KRT35Q92764 455 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 FOXJ1Q92949 421 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 RBM41Q96IZ5 413 aaKnown RBP13.8□□□□□ -0.2
SHMT2-228ENST00000557302 LRIG1Q96JA1 1093 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 HSPA12BQ96MM6 686 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 ZNF830Q96NB3 372 aaPredicted RBP13.8□□□□□ -0.2
SHMT2-228ENST00000557302 CINPQ9BW66 212 aaPredicted RBP13.8□□□□□ -0.2
SHMT2-228ENST00000557302 PCED1AQ9H1Q7 454 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 NEUROG2Q9H2A3 272 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 ARRDC1-AS1Q9H2J1 176 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 LHX3Q9UBR4 397 aa13.8□□□□□ -0.2
SHMT2-228ENST00000557302 SEPT3Q9UH03 358 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms