RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 SCML1Q9UN30 329 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 TFR2Q9UP52 801 aa11.8□□□□□ -0.52
CCDC88C-208ENST00000554165 TBC1D3DA0A087WVF3 549 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 TBC1D3IA0A087WXS9 549 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 TBC1D3EA0A087X179 549 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 TBC1D3KA0A087X1G2 549 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 A0A1B0GTW7 788 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 TBC1D3FA6NER0 549 aaPredicted RBP11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 LRRC72A6NJI9 287 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 TBC1D3LB9A6J9 549 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 MYO1FO00160 1098 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 ARHGAP33O14559 1287 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 GIPC1O14908 333 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 ALOX15BO15296 676 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 FGF10O15520 208 aaPredicted RBP11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 DAPK3O43293 454 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 FOXD2O60548 495 aaPredicted RBP11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 TMCC1O94876 653 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 CD48P09326 243 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 TPM1P09493 284 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 TBC1D3HP0C7X1 549 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 ETFBP38117 255 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 LIMK1P53667 647 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 TAS2R40P59535 323 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 GRIK2Q13002 908 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 CYTH1Q15438 398 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 TSR1Q2NL82 804 aaKnown RBP11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 PIP5KL1Q5T9C9 394 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 FAM46CQ5VWP2 391 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 AFMIDQ63HM1 303 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 TBC1D3GQ6DHY5 549 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 TBC1D3CQ6IPX1 549 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 POLNQ7Z5Q5 900 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 TBC1D3Q8IZP1 549 aaPredicted RBP11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 RYBPQ8N488 228 aaPredicted RBP11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 MINDY1Q8N5J2 469 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 PCDH20Q8N6Y1 951 aaKnown RBP11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 OR2T34Q8NGX1 318 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 CEP76Q8TAP6 659 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 CTNNBL1Q8WYA6 563 aaPredicted RBP11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 KLK6Q92876 244 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 FAM131CQ96AQ9 280 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 EXOC2Q96KP1 924 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 CCDC42Q96M95 316 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 SLC6A18Q96N87 628 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 RTKNQ9BST9 563 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 CEP44Q9C0F1 390 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 PCED1AQ9H1Q7 454 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 RETREG1Q9H6L5 497 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 ZDHHC6Q9H6R6 413 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 PCDH18Q9HCL0 1135 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 TMEM9BQ9NQ34 198 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 KLHL11Q9NVR0 708 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 HECAQ9UBI9 543 aaPredicted RBP11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 LHX3Q9UBR4 397 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 IL36AQ9UHA7 158 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 FZD4Q9ULV1 537 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 HPCAL4Q9UM19 191 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 CA5BQ9Y2D0 317 aa11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 FARP1Q9Y4F1 1045 aaPredicted RBP11.79□□□□□ -0.52
CCDC88C-208ENST00000554165 C1QTNF3-AMACRE9PGA6 284 aa11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 DFFAO00273 331 aa11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 KRIT1O00522 736 aa11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 INSIG1O15503 277 aa11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 PLRG1O43660 514 aaKnown RBP11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 GJB3O75712 270 aa11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 PROSCO94903 275 aa11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 WNT1P04628 370 aa11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 TMEM253P0C7T8 217 aa11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 GNSP15586 552 aa11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 IL4RP24394 825 aa11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 CD27P26842 260 aa11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 RECQLP46063 649 aaPredicted RBP11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 YBEYP58557 167 aaPredicted RBP11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 MESDQ14696 234 aa11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 ACAP1Q15027 740 aa11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 DPYSL2Q16555 572 aa11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 MYLK3Q32MK0 819 aa11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 PARP15Q460N3 678 aa11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 BOLA3Q53S33 107 aa11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 LRRC73Q5JTD7 316 aa11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 PSTKQ8IV42 348 aaKnown RBP11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 CNGA4Q8IV77 575 aa11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 TMIEQ8NEW7 156 aa11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 SLC35G2Q8TBE7 412 aa11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 ISG20Q96AZ6 181 aaKnown RBP11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 CSPG4P5Q96PW8 444 aa11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 HEPHQ9BQS7 1158 aa11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 PDFQ9HBH1 243 aa11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 PCNX2A6NKB5 2137 aa11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 PLXNA2O75051 1894 aa11.78□□□□□ -0.52
CCDC88C-208ENST00000554165 A0A1W2PPC4 97 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 H3BRJ5 948 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 PRAMEF11O60813 436 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 PRNPP04156 253 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 UGT2B4P06133 528 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 PRLRP16471 622 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 ITIH2P19823 946 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 SDHBP21912 280 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 HTR7P34969 479 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms