RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 PSAPL1Q6NUJ1 521 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 ALKBH5Q6P6C2 394 aaKnown RBP10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 LAYNQ6UX15 382 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 LEKR1Q6ZMV7 388 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 VPS36Q86VN1 386 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 VSTM4Q8IW00 320 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 RNF214Q8ND24 703 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 DEFB124Q8NES8 71 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 ARHGEF26Q96DR7 871 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 HMCESQ96FZ2 354 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 SLC6A18Q96N87 628 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 EIF3CQ99613 913 aaKnown RBP10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 DNAJC7Q99615 494 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 HEPHQ9BQS7 1158 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 THAP2Q9H0W7 228 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 LRRC19Q9H756 370 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 CATSPERBQ9H7T0 1116 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 IL21RQ9HBE5 538 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 IL36AQ9UHA7 158 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 ANKRD6Q9Y2G4 727 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 SNX11Q9Y5W9 270 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 FRYQ5TBA9 3013 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 SPEGQ15772 3267 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 ZFYVE26Q68DK2 2539 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 TBC1D3DA0A087WVF3 549 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 TBC1D3IA0A087WXS9 549 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 TBC1D3EA0A087X179 549 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 TBC1D3KA0A087X1G2 549 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 A0A1W2PR77 199 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 TBC1D3FA6NER0 549 aaPredicted RBP10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 TBC1D3LB9A6J9 549 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 KPNA3O00505 521 aaPredicted RBP10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 VILLO15195 856 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 FGF10O15520 208 aaPredicted RBP10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 CBFA2T2O43439 604 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 PRPSAP2O60256 369 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 RNF8O76064 485 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 WNT1P04628 370 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 TBC1D3HP0C7X1 549 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 TCF4P15884 667 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 EIF4A3P38919 411 aaKnown RBP10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 CTSKP43235 329 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 RECQLP46063 649 aaPredicted RBP10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 DNA2P51530 1060 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 CCNHP51946 323 aaPredicted RBP10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 GEMIN4P57678 1058 aaKnown RBP10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 TPI1P60174 286 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 RACK1P63244 317 aaKnown RBP10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 SERINC3Q13530 473 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 ACAP1Q15027 740 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 TEAD4Q15561 434 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 PARP15Q460N3 678 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 INO80DQ53TQ3 878 aaPredicted RBP10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 CCDC122Q5T0U0 273 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 AFMIDQ63HM1 303 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 TBC1D3GQ6DHY5 549 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 TBC1D3CQ6IPX1 549 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 IL27RAQ6UWB1 636 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 DBX2Q6ZNG2 339 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 ERN2Q76MJ5 926 aaKnown RBP10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 TRIM69Q86WT6 500 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 PSTKQ8IV42 348 aaKnown RBP10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 TBC1D3Q8IZP1 549 aaPredicted RBP10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 OR8K1Q8NGG5 319 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 GRIN3AQ8TCU5 1115 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 HDAC8Q9BY41 377 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 TM6SF2Q9BZW4 377 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 DHX35Q9H5Z1 703 aaKnown RBP10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 GAREM1Q9H706 876 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 HECAQ9UBI9 543 aaPredicted RBP10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 TPX2Q9ULW0 747 aaKnown RBP10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 HPCAL4Q9UM19 191 aa10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 FNDC3AQ9Y2H6 1198 aaKnown RBP10.46□□□□□ -0.73
CCDC88C-206ENST00000553437 RALGAPA1Q6GYQ0 2036 aa10.46□□□□□ -0.74
CCDC88C-206ENST00000553437 NUMA1Q14980 2115 aa10.46□□□□□ -0.74
CCDC88C-206ENST00000553437 ZSCAN5CA6NGD5 496 aaPredicted RBP10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 EEF2KO00418 725 aaKnown RBP10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 KCNK3O14649 394 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 BUB1O43683 1085 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 SH3BP5O60239 455 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 TMCC1O94876 653 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 CER1O95813 267 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 GSRP00390 522 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 ZNF883P0CG24 379 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 ERCC2P18074 760 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 PMLP29590 882 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 GKP32189 559 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 HCAR3P49019 387 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 NDST2P52849 883 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 FAM193AP78312 1265 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 TRIM14Q14142 442 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 PIGHQ14442 188 aaPredicted RBP10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 CYTH1Q15438 398 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 DPYSL2Q16555 572 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 ZNF423Q2M1K9 1284 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 MYLK3Q32MK0 819 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 BOLA3Q53S33 107 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 TXNRD3NBQ6F5E7 133 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 NEK5Q6P3R8 708 aa10.45□□□□□ -0.74
CCDC88C-206ENST00000553437 RFX8Q6ZV50 586 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms