RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-217	ENST00000546164	CNTN1	Q12860	1018 aa		12.09	□□□□□ -0.47
YBX3-217	ENST00000546164	DPYS	Q14117	519 aa		12.09	□□□□□ -0.47
YBX3-217	ENST00000546164	PPP6R3	Q5H9R7	873 aa	Predicted RBP	12.09	□□□□□ -0.47
YBX3-217	ENST00000546164	KCNT1	Q5JUK3	1230 aa		12.09	□□□□□ -0.47
YBX3-217	ENST00000546164	DAB2IP	Q5VWQ8	1189 aa		12.09	□□□□□ -0.47
YBX3-217	ENST00000546164	NCEH1	Q6PIU2	408 aa		12.09	□□□□□ -0.47
YBX3-217	ENST00000546164	ERMP1	Q7Z2K6	904 aa		12.09	□□□□□ -0.47
YBX3-217	ENST00000546164	ZCCHC9	Q8N567	271 aa	Known RBP	12.09	□□□□□ -0.47
YBX3-217	ENST00000546164	LZTR1	Q8N653	840 aa		12.09	□□□□□ -0.47
YBX3-217	ENST00000546164	CHST14	Q8NCH0	376 aa		12.09	□□□□□ -0.47
YBX3-217	ENST00000546164	FAM71B	Q8TC56	605 aa		12.09	□□□□□ -0.47
YBX3-217	ENST00000546164	VOPP1	Q96AW1	172 aa		12.09	□□□□□ -0.47
YBX3-217	ENST00000546164	LRIG1	Q96JA1	1093 aa		12.09	□□□□□ -0.47
YBX3-217	ENST00000546164	BTBD6	Q96KE9	485 aa		12.09	□□□□□ -0.47
YBX3-217	ENST00000546164	HEPH	Q9BQS7	1158 aa		12.09	□□□□□ -0.47
YBX3-217	ENST00000546164	ZDHHC5	Q9C0B5	715 aa		12.09	□□□□□ -0.47
YBX3-217	ENST00000546164	ZWILCH	Q9H900	591 aa		12.09	□□□□□ -0.47
YBX3-217	ENST00000546164	TMEM9B	Q9NQ34	198 aa		12.09	□□□□□ -0.47
YBX3-217	ENST00000546164	STAU2	Q9NUL3	570 aa	Known RBP eCLIP	12.09	□□□□□ -0.47
YBX3-217	ENST00000546164	CTTNBP2NL	Q9P2B4	639 aa		12.09	□□□□□ -0.47
YBX3-217	ENST00000546164	RCOR3	Q9P2K3	495 aa	Predicted RBP	12.09	□□□□□ -0.47
YBX3-217	ENST00000546164	IL36A	Q9UHA7	158 aa		12.09	□□□□□ -0.47
YBX3-217	ENST00000546164	EIF2B4	Q9UI10	523 aa	Known RBP	12.09	□□□□□ -0.47
YBX3-217	ENST00000546164	INTU	Q9ULD6	942 aa		12.09	□□□□□ -0.47
YBX3-217	ENST00000546164	ACTL7A	Q9Y615	435 aa		12.09	□□□□□ -0.47
YBX3-217	ENST00000546164	PCDH15	Q96QU1	1955 aa		12.09	□□□□□ -0.47
YBX3-217	ENST00000546164	NYNRIN	Q9P2P1	1898 aa	Known RBP	12.08	□□□□□ -0.48
YBX3-217	ENST00000546164		A0A1W2PPC4	97 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	ARHGAP42	A6NI28	874 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	C4orf47	A7E2U8	309 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	ARHGAP33	O14559	1287 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	BCAT2	O15382	392 aa	Predicted RBP	12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	DAPK3	O43293	454 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	LAT	O43561	262 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	BUB1	O43683	1085 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	PRAMEF11	O60813	436 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	TMCC1	O94876	653 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	FSBP	O95073	299 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	SYP	P08247	313 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	NUDT1	P36639	197 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	ARL4A	P40617	200 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	SNRPD1	P62314	119 aa	Known RBP	12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	TCEAL1	Q15170	157 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	HADH	Q16836	314 aa	Known RBP	12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	SMTNL2	Q2TAL5	461 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	ARSI	Q5FYB1	569 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	PIP5KL1	Q5T9C9	394 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	TXNRD3NB	Q6F5E7	133 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	DGLUCY	Q7Z3D6	616 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	POLN	Q7Z5Q5	900 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	ARHGAP12	Q8IWW6	846 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	OR2AP1	Q8NGE2	309 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	OR14C36	Q8NHC7	312 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	TSC1	Q92574	1164 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	PPP1R16A	Q96I34	528 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	CSPG4P5	Q96PW8	444 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	HDAC8	Q9BY41	377 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	MIR1-1HG	Q9H1L0	117 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	PDF	Q9HBH1	243 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	PCDH18	Q9HCL0	1135 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	SPTLC3	Q9NUV7	552 aa		12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	HECA	Q9UBI9	543 aa	Predicted RBP	12.08	□□□□□ -0.48
YBX3-217	ENST00000546164	FAM47DP	A6NHR8	397 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	RNF103	O00237	685 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	PLK4	O00444	970 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	KPNA3	O00505	521 aa	Predicted RBP	12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	LEFTY1	O75610	366 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	LCA5L	O95447	670 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	POP4	O95707	220 aa	Known RBP	12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	FECH	P22830	423 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	ITGB7	P26010	798 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	GRIA4	P48058	902 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	PAPOLA	P51003	745 aa	Known RBP	12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	DNA2	P51530	1060 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	ARSE	P51690	589 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	AFF3	P51826	1226 aa	Known RBP	12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	TAS2R38	P59533	333 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	GRIK2	Q13002	908 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	NEK5	Q6P3R8	708 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	ERN2	Q76MJ5	926 aa	Known RBP	12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	TRIM69	Q86WT6	500 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	ZNF354C	Q86Y25	554 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	RHOT2	Q8IXI1	618 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	NPW	Q8N729	165 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	GRIN3A	Q8TCU5	1115 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	RFFL	Q8WZ73	363 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	SNX19	Q92543	992 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	HSPH1	Q92598	858 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	ARRDC3	Q96B67	414 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	GDAP1L1	Q96MZ0	367 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	OSBPL1A	Q9BXW6	950 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	TM6SF2	Q9BZW4	377 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	SLC39A8	Q9C0K1	460 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	PREB	Q9HCU5	417 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	TM9SF3	Q9HD45	589 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	DYRK4	Q9NR20	520 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	DNAAF2	Q9NVR5	837 aa	Known RBP	12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	MFHAS1	Q9Y4C4	1052 aa		12.07	□□□□□ -0.48
YBX3-217	ENST00000546164	SLCO1B1	Q9Y6L6	691 aa		12.07	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms