RNA–Protein interactions for RNA: ENST00000538235.2

CHFR-216, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 687 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-216ENST00000538235 PABPC3Q9H361 631 aaKnown RBP13.31□□□□□ -0.28
CHFR-216ENST00000538235 BCCIPQ9P287 314 aaKnown RBP eCLIP13.31□□□□□ -0.28
CHFR-216ENST00000538235 UBA2Q9UBT2 640 aaPredicted RBP13.31□□□□□ -0.28
CHFR-216ENST00000538235 AMFRQ9UKV5 643 aa13.31□□□□□ -0.28
CHFR-216ENST00000538235 PPM1HQ9ULR3 514 aa13.31□□□□□ -0.28
CHFR-216ENST00000538235 R3HDM2Q9Y2K5 976 aaKnown RBP13.31□□□□□ -0.28
CHFR-216ENST00000538235 LAMA1P25391 3075 aa13.31□□□□□ -0.28
CHFR-216ENST00000538235 CCDC163A0A0D9SF12 145 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 A0A1W2PP55 124 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 CCDC66A2RUB6 948 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 APOL1O14791 398 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 MCF2LO15068 1137 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 SYNCRIPO60506 623 aaKnown RBP13.3□□□□□ -0.28
CHFR-216ENST00000538235 PIGNO95427 931 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 IGLV3-19P01714 112 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 ACSL1P33121 698 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 PTPN7P35236 360 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 CLCN6P51797 869 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 TAS2R38P59533 333 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 MAXP61244 160 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 KLF1Q13351 362 aaPredicted RBP13.3□□□□□ -0.28
CHFR-216ENST00000538235 ELAVL3Q14576 367 aaKnown RBP13.3□□□□□ -0.28
CHFR-216ENST00000538235 TFDP3Q5H9I0 405 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 ZNF776Q68DI1 518 aaPredicted RBP13.3□□□□□ -0.28
CHFR-216ENST00000538235 SDE2Q6IQ49 451 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 RETSATQ6NUM9 610 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 BBS12Q6ZW61 710 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 FAM124AQ86V42 546 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 SLC41A1Q8IVJ1 513 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 ATPAF2Q8N5M1 289 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 LZTR1Q8N653 840 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 DEFB119Q8N690 84 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 PCDH20Q8N6Y1 951 aaKnown RBP13.3□□□□□ -0.28
CHFR-216ENST00000538235 CNTD1Q8N815 330 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 PIP4K2CQ8TBX8 421 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 HDAC11Q96DB2 347 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 SIPA1Q96FS4 1042 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 CEP44Q9C0F1 390 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 SP110Q9HB58 689 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.3□□□□□ -0.28
CHFR-216ENST00000538235 EVLQ9UI08 416 aaPredicted RBP13.3□□□□□ -0.28
CHFR-216ENST00000538235 HCN4Q9Y3Q4 1203 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 PCDHGA2Q9Y5H1 932 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 HEY1Q9Y5J3 304 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 TRPM6Q9BX84 2022 aa13.3□□□□□ -0.28
CHFR-216ENST00000538235 CXorf51AA0A1B0GTR3 108 aa13.29□□□□□ -0.28
CHFR-216ENST00000538235 LEFTY1O75610 366 aa13.29□□□□□ -0.28
CHFR-216ENST00000538235 RPP40O75818 363 aaKnown RBP13.29□□□□□ -0.28
CHFR-216ENST00000538235 ZRANB2O95218 330 aaKnown RBP eCLIP13.29□□□□□ -0.28
CHFR-216ENST00000538235 GSRP00390 522 aa13.29□□□□□ -0.28
CHFR-216ENST00000538235 HLA-DQB2P05538 268 aa13.29□□□□□ -0.28
CHFR-216ENST00000538235 ITIH2P19823 946 aa13.29□□□□□ -0.28
CHFR-216ENST00000538235 CHRNA3P32297 505 aa13.29□□□□□ -0.28
CHFR-216ENST00000538235 SERPINB6P35237 376 aa13.29□□□□□ -0.28
CHFR-216ENST00000538235 ABL2P42684 1182 aa13.29□□□□□ -0.28
CHFR-216ENST00000538235 PPIDQ08752 370 aaKnown RBP13.29□□□□□ -0.28
CHFR-216ENST00000538235 LBRQ14739 615 aaKnown RBP13.29□□□□□ -0.28
CHFR-216ENST00000538235 PRKD1Q15139 912 aaPredicted RBP13.29□□□□□ -0.28
CHFR-216ENST00000538235 SIX1Q15475 284 aaPredicted RBP13.29□□□□□ -0.28
CHFR-216ENST00000538235 PLK5Q496M5 336 aa13.29□□□□□ -0.28
CHFR-216ENST00000538235 CARD16Q5EG05 197 aa13.29□□□□□ -0.28
CHFR-216ENST00000538235 ARSIQ5FYB1 569 aa13.29□□□□□ -0.28
CHFR-216ENST00000538235 LRRC73Q5JTD7 316 aa13.29□□□□□ -0.28
CHFR-216ENST00000538235 PIP5KL1Q5T9C9 394 aa13.29□□□□□ -0.28
CHFR-216ENST00000538235 AGBL4Q5VU57 503 aa13.29□□□□□ -0.28
CHFR-216ENST00000538235 PARS2Q7L3T8 475 aaKnown RBP13.29□□□□□ -0.28
CHFR-216ENST00000538235 CCDC50Q8IVM0 306 aa13.29□□□□□ -0.28
CHFR-216ENST00000538235 MAP7D3Q8IWC1 876 aa13.29□□□□□ -0.28
CHFR-216ENST00000538235 RCOR2Q8IZ40 523 aa13.29□□□□□ -0.28
CHFR-216ENST00000538235 PGBD3Q8N328 593 aa13.29□□□□□ -0.28
CHFR-216ENST00000538235 SLC35F6Q8N357 371 aa13.29□□□□□ -0.28
CHFR-216ENST00000538235 OR2AP1Q8NGE2 309 aa13.29□□□□□ -0.28
CHFR-216ENST00000538235 ATOH1Q92858 354 aaPredicted RBP13.29□□□□□ -0.28
CHFR-216ENST00000538235 ISG20Q96AZ6 181 aaKnown RBP13.29□□□□□ -0.28
CHFR-216ENST00000538235 SMIM14Q96QK8 99 aa13.29□□□□□ -0.28
CHFR-216ENST00000538235 OSBPL8Q9BZF1 889 aa13.29□□□□□ -0.28
CHFR-216ENST00000538235 KCNH6Q9H252 994 aa13.29□□□□□ -0.28
CHFR-216ENST00000538235 EPC1Q9H2F5 836 aa13.29□□□□□ -0.28
CHFR-216ENST00000538235 ZDHHC6Q9H6R6 413 aa13.29□□□□□ -0.28
CHFR-216ENST00000538235 ITM2CQ9NQX7 267 aa13.29□□□□□ -0.28
CHFR-216ENST00000538235 SUN2Q9UH99 717 aa13.29□□□□□ -0.28
CHFR-216ENST00000538235 GGT7Q9UJ14 662 aa13.29□□□□□ -0.28
CHFR-216ENST00000538235 ZSCAN5CA6NGD5 496 aaPredicted RBP13.28□□□□□ -0.28
CHFR-216ENST00000538235 KCNK1O00180 336 aa13.28□□□□□ -0.28
CHFR-216ENST00000538235 ENC1O14682 589 aa13.28□□□□□ -0.28
CHFR-216ENST00000538235 IL1BP01584 269 aa13.28□□□□□ -0.28
CHFR-216ENST00000538235 SLC8A1P32418 973 aa13.28□□□□□ -0.28
CHFR-216ENST00000538235 PTGER3P43115 390 aa13.28□□□□□ -0.28
CHFR-216ENST00000538235 RWDD2BP57060 319 aa13.28□□□□□ -0.28
CHFR-216ENST00000538235 RHOAP61586 193 aa13.28□□□□□ -0.28
CHFR-216ENST00000538235 PPP2CBP62714 309 aa13.28□□□□□ -0.28
CHFR-216ENST00000538235 PPP2CAP67775 309 aa13.28□□□□□ -0.28
CHFR-216ENST00000538235 SLC20A2Q08357 652 aa13.28□□□□□ -0.28
CHFR-216ENST00000538235 NIPAL4Q0D2K0 466 aa13.28□□□□□ -0.28
CHFR-216ENST00000538235 CNTN1Q12860 1018 aa13.28□□□□□ -0.28
CHFR-216ENST00000538235 NOMO1Q15155 1222 aa13.28□□□□□ -0.28
CHFR-216ENST00000538235 PTPRRQ15256 657 aa13.28□□□□□ -0.28
CHFR-216ENST00000538235 INO80DQ53TQ3 878 aaPredicted RBP13.28□□□□□ -0.28
CHFR-216ENST00000538235 TMCO4Q5TGY1 634 aa13.28□□□□□ -0.28
CHFR-216ENST00000538235 PMS2CLQ68D20 193 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms