RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 PACSIN1Q9BY11 444 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 TM6SF2Q9BZW4 377 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 CEP44Q9C0F1 390 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 MAGEH1Q9H213 219 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 GAREM1Q9H706 876 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 ETNK2Q9NVF9 386 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 CWC15Q9P013 229 aaKnown RBP10.86□□□□□ -0.67
CD44-227ENST00000528086 MYO1AQ9UBC5 1043 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 LHX3Q9UBR4 397 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 GGT7Q9UJ14 662 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 AP4E1Q9UPM8 1137 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 NCKAP1Q9Y2A7 1128 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 SHROOM3Q8TF72 1996 aa10.86□□□□□ -0.67
CD44-227ENST00000528086 ZZEF1O43149 2961 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 J3KR12 359 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 VILLO15195 856 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 SLC7A4O43246 635 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 RAMP2O60895 175 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 TMCC1O94876 653 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 SYPP08247 313 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 ITIH2P19823 946 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 KCNA4P22459 653 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 IL4RP24394 825 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 MAT2AP31153 395 aaKnown RBP10.85□□□□□ -0.67
CD44-227ENST00000528086 ABL2P42684 1182 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 RGRP47804 291 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 AFF3P51826 1226 aaKnown RBP10.85□□□□□ -0.67
CD44-227ENST00000528086 RACK1P63244 317 aaKnown RBP10.85□□□□□ -0.67
CD44-227ENST00000528086 SHC2P98077 582 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 SLC25A11Q02978 314 aaKnown RBP10.85□□□□□ -0.67
CD44-227ENST00000528086 SERINC3Q13530 473 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 DPYSQ14117 519 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 POLD3Q15054 466 aaPredicted RBP10.85□□□□□ -0.67
CD44-227ENST00000528086 ZNF423Q2M1K9 1284 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 SKOR2Q2VWA4 1001 aaPredicted RBP10.85□□□□□ -0.67
CD44-227ENST00000528086 TMEM259Q4ZIN3 620 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 CARD16Q5EG05 197 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 ERMARDQ5T6L9 678 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 SEL1L3Q68CR1 1132 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 PARS2Q7L3T8 475 aaKnown RBP10.85□□□□□ -0.67
CD44-227ENST00000528086 KANSL1Q7Z3B3 1105 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 TRIM69Q86WT6 500 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 PLPP6Q8IY26 295 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 PCDH20Q8N6Y1 951 aaKnown RBP10.85□□□□□ -0.67
CD44-227ENST00000528086 TMEM145Q8NBT3 493 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 RNF214Q8ND24 703 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 TSC1Q92574 1164 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 KLK6Q92876 244 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 ISG20Q96AZ6 181 aaKnown RBP10.85□□□□□ -0.67
CD44-227ENST00000528086 CELF6Q96J87 481 aaKnown RBP10.85□□□□□ -0.67
CD44-227ENST00000528086 CNTNAP3BQ96NU0 1288 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 CHP1Q99653 195 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 CNTNAP3Q9BZ76 1288 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 ZDHHC5Q9C0B5 715 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 SLC39A8Q9C0K1 460 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 RETREG1Q9H6L5 497 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 TOR4AQ9NXH8 423 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 FREM2Q5SZK8 3169 aa10.85□□□□□ -0.67
CD44-227ENST00000528086 DMXL2Q8TDJ6 3036 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 TBC1D3DA0A087WVF3 549 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 TBC1D3IA0A087WXS9 549 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 TBC1D3EA0A087X179 549 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 TBC1D3KA0A087X1G2 549 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 CXorf51AA0A1B0GTR3 108 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 TBC1D3FA6NER0 549 aaPredicted RBP10.84□□□□□ -0.67
CD44-227ENST00000528086 LRRC72A6NJI9 287 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 TBC1D3LB9A6J9 549 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 KPNA3O00505 521 aaPredicted RBP10.84□□□□□ -0.67
CD44-227ENST00000528086 MUSKO15146 869 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 RAD51BO15315 384 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 RNGTTO60942 597 aaKnown RBP10.84□□□□□ -0.67
CD44-227ENST00000528086 PEX11BO96011 259 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 TBC1D3HP0C7X1 549 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 ZNF883P0CG24 379 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 PRLRP16471 622 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 EIF4A3P38919 411 aaKnown RBP10.84□□□□□ -0.67
CD44-227ENST00000528086 ARSEP51690 589 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 AIF1P55008 147 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 TBX2Q13207 712 aaPredicted RBP10.84□□□□□ -0.67
CD44-227ENST00000528086 ATP13A4Q4VNC1 1196 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 FAM46CQ5VWP2 391 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 TBC1D3GQ6DHY5 549 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 TBC1D3CQ6IPX1 549 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 RETSATQ6NUM9 610 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 ERN2Q76MJ5 926 aaKnown RBP10.84□□□□□ -0.67
CD44-227ENST00000528086 SLCO6A1Q86UG4 719 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 ZSWIM9Q86XI8 627 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 VSTM4Q8IW00 320 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 TBC1D3Q8IZP1 549 aaPredicted RBP10.84□□□□□ -0.67
CD44-227ENST00000528086 NIPA2Q8N8Q9 360 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 FUBP1Q96AE4 644 aaKnown RBP10.84□□□□□ -0.67
CD44-227ENST00000528086 DNAJC7Q99615 494 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 HEPHQ9BQS7 1158 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 HDAC8Q9BY41 377 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 KDM4CQ9H3R0 1056 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 TSPY26PQ9H489 355 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 DHX35Q9H5Z1 703 aaKnown RBP10.84□□□□□ -0.67
CD44-227ENST00000528086 FZD3Q9NPG1 666 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 TM7SF3Q9NS93 570 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 HECAQ9UBI9 543 aaPredicted RBP10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms