RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 KRIT1O00522 736 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 CES2O00748 559 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 MUSKO15146 869 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 KCNN4O15554 427 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 LIASO43766 372 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 GPR37L1O60883 481 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 GJB3O75712 270 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 IGSF6O95976 241 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 PRLRP16471 622 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 RBL1P28749 1068 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 GKP32189 559 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 RGRP47804 291 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 PXNP49023 591 aaPredicted RBP12.09□□□□□ -0.47
CUX1-210ENST00000497815 VASPP50552 380 aaPredicted RBP12.09□□□□□ -0.47
CUX1-210ENST00000497815 RENBPP51606 427 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 CCR3P51677 355 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 DGKEP52429 567 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 MAXP61244 160 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 ZBTB17Q13105 803 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 XRCC4Q13426 336 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 CAMK2GQ13555 558 aaPredicted RBP12.09□□□□□ -0.47
CUX1-210ENST00000497815 HNRNPDQ14103 355 aaKnown RBP12.09□□□□□ -0.47
CUX1-210ENST00000497815 SIX1Q15475 284 aaPredicted RBP12.09□□□□□ -0.47
CUX1-210ENST00000497815 CARD16Q5EG05 197 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 HEATR6Q6AI08 1181 aaKnown RBP12.09□□□□□ -0.47
CUX1-210ENST00000497815 ANO7Q6IWH7 933 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 TSSK4Q6SA08 328 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 DPY19L3Q6ZPD9 716 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 METTL3Q86U44 580 aaKnown RBP12.09□□□□□ -0.47
CUX1-210ENST00000497815 CDKL3Q8IVW4 592 aaPredicted RBP12.09□□□□□ -0.47
CUX1-210ENST00000497815 PGBD3Q8N328 593 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 BBS5Q8N3I7 341 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 PGBD5Q8N414 524 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 PCDH20Q8N6Y1 951 aaKnown RBP12.09□□□□□ -0.47
CUX1-210ENST00000497815 DTWD2Q8NBA8 298 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 CHST14Q8NCH0 376 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 OR2AP1Q8NGE2 309 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 OR2A12Q8NGT7 310 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 GRIN3AQ8TCU5 1115 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 ACTRT1Q8TDG2 376 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 HMGB4Q8WW32 186 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 HTR3CQ8WXA8 447 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 MAML1Q92585 1016 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 ZNF419Q96HQ0 510 aaPredicted RBP12.09□□□□□ -0.47
CUX1-210ENST00000497815 CCDC114Q96M63 670 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 GDAP1L1Q96MZ0 367 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 IER2Q9BTL4 223 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 C1QTNF1Q9BXJ1 281 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 ZDHHC6Q9H6R6 413 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 POLMQ9NP87 494 aaPredicted RBP12.09□□□□□ -0.47
CUX1-210ENST00000497815 BCCIPQ9P287 314 aaKnown RBP eCLIP12.09□□□□□ -0.47
CUX1-210ENST00000497815 HECAQ9UBI9 543 aaPredicted RBP12.09□□□□□ -0.47
CUX1-210ENST00000497815 EVLQ9UI08 416 aaPredicted RBP12.09□□□□□ -0.47
CUX1-210ENST00000497815 DNPEPQ9ULA0 475 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 A0A0C4DFX4 3053 aa12.09□□□□□ -0.47
CUX1-210ENST00000497815 MUC3AQ02505 3323 aa12.08□□□□□ -0.48
CUX1-210ENST00000497815 RNF103O00237 685 aa12.08□□□□□ -0.48
CUX1-210ENST00000497815 INSIG1O15503 277 aa12.08□□□□□ -0.48
CUX1-210ENST00000497815 ZBTB24O43167 697 aaPredicted RBP12.08□□□□□ -0.48
CUX1-210ENST00000497815 LAMTOR5O43504 91 aa12.08□□□□□ -0.48
CUX1-210ENST00000497815 GSRP00390 522 aa12.08□□□□□ -0.48
CUX1-210ENST00000497815 IL1BP01584 269 aa12.08□□□□□ -0.48
CUX1-210ENST00000497815 HLA-DQB2P05538 268 aa12.08□□□□□ -0.48
CUX1-210ENST00000497815 GABRG2P18507 467 aa12.08□□□□□ -0.48
CUX1-210ENST00000497815 PSMD8P48556 350 aa12.08□□□□□ -0.48
CUX1-210ENST00000497815 CCNHP51946 323 aaPredicted RBP12.08□□□□□ -0.48
CUX1-210ENST00000497815 NRLP54845 237 aa12.08□□□□□ -0.48
CUX1-210ENST00000497815 SNRPD1P62314 119 aaKnown RBP12.08□□□□□ -0.48
CUX1-210ENST00000497815 IFI35P80217 286 aaPredicted RBP12.08□□□□□ -0.48
CUX1-210ENST00000497815 ZNF33AQ06730 810 aa12.08□□□□□ -0.48
CUX1-210ENST00000497815 POM121L1PQ3SYA9 428 aa12.08□□□□□ -0.48
CUX1-210ENST00000497815 KIAA1324Q6UXG2 1013 aaKnown RBP12.08□□□□□ -0.48
CUX1-210ENST00000497815 MMAAQ8IVH4 418 aaKnown RBP12.08□□□□□ -0.48
CUX1-210ENST00000497815 SLC35B2Q8TB61 432 aa12.08□□□□□ -0.48
CUX1-210ENST00000497815 OR8D1Q8WZ84 308 aa12.08□□□□□ -0.48
CUX1-210ENST00000497815 FATE1Q969F0 183 aa12.08□□□□□ -0.48
CUX1-210ENST00000497815 ISG20Q96AZ6 181 aaKnown RBP12.08□□□□□ -0.48
CUX1-210ENST00000497815 AGAP3Q96P47 875 aa12.08□□□□□ -0.48
CUX1-210ENST00000497815 PSKH2Q96QS6 385 aa12.08□□□□□ -0.48
CUX1-210ENST00000497815 FAM129BQ96TA1 746 aa12.08□□□□□ -0.48
CUX1-210ENST00000497815 NAP1L3Q99457 506 aaPredicted RBP12.08□□□□□ -0.48
CUX1-210ENST00000497815 TMEM121Q9BTD3 319 aa12.08□□□□□ -0.48
CUX1-210ENST00000497815 MKRN2Q9H000 416 aaKnown RBP12.08□□□□□ -0.48
CUX1-210ENST00000497815 TTC7AQ9ULT0 858 aaPredicted RBP12.08□□□□□ -0.48
CUX1-210ENST00000497815 FARP1Q9Y4F1 1045 aaPredicted RBP12.08□□□□□ -0.48
CUX1-210ENST00000497815 F5P12259 2224 aa12.08□□□□□ -0.48
CUX1-210ENST00000497815 CHD5Q8TDI0 1954 aa12.07□□□□□ -0.48
CUX1-210ENST00000497815 BCLAF3A2AJT9 711 aaKnown RBP12.07□□□□□ -0.48
CUX1-210ENST00000497815 F5H423 210 aaPredicted RBP12.07□□□□□ -0.48
CUX1-210ENST00000497815 KIF2AO00139 706 aaPredicted RBP12.07□□□□□ -0.48
CUX1-210ENST00000497815 RNASEH1O60930 286 aaKnown RBP12.07□□□□□ -0.48
CUX1-210ENST00000497815 URI1O94763 535 aaPredicted RBP12.07□□□□□ -0.48
CUX1-210ENST00000497815 ALDH1A2O94788 518 aa12.07□□□□□ -0.48
CUX1-210ENST00000497815 APBB3O95704 486 aa12.07□□□□□ -0.48
CUX1-210ENST00000497815 NDUFV2P19404 249 aa12.07□□□□□ -0.48
CUX1-210ENST00000497815 PTPN3P26045 913 aa12.07□□□□□ -0.48
CUX1-210ENST00000497815 CHRNA3P32297 505 aa12.07□□□□□ -0.48
CUX1-210ENST00000497815 SCNN1BP51168 640 aa12.07□□□□□ -0.48
CUX1-210ENST00000497815 COPAP53621 1224 aa12.07□□□□□ -0.48
CUX1-210ENST00000497815 CSTF1Q05048 431 aaKnown RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms