RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 ARHGAP12Q8IWW6 846 aa18.46■□□□□ 0.55
COL9A3-214ENST00000490398 TBC1D3Q8IZP1 549 aaPredicted RBP18.46■□□□□ 0.55
COL9A3-214ENST00000490398 NPWQ8N729 165 aa18.46■□□□□ 0.55
COL9A3-214ENST00000490398 DEFB124Q8NES8 71 aa18.46■□□□□ 0.55
COL9A3-214ENST00000490398 TMIEQ8NEW7 156 aa18.46■□□□□ 0.55
COL9A3-214ENST00000490398 CATSPERBQ9H7T0 1116 aa18.46■□□□□ 0.55
COL9A3-214ENST00000490398 ZWILCHQ9H900 591 aa18.46■□□□□ 0.55
COL9A3-214ENST00000490398 HECAQ9UBI9 543 aaPredicted RBP18.46■□□□□ 0.55
COL9A3-214ENST00000490398 SNX11Q9Y5W9 270 aa18.46■□□□□ 0.55
COL9A3-214ENST00000490398 A0A1W2PPC4 97 aa18.45■□□□□ 0.54
COL9A3-214ENST00000490398 FGF10O15520 208 aaPredicted RBP18.45■□□□□ 0.54
COL9A3-214ENST00000490398 TMCC1O94876 653 aa18.45■□□□□ 0.54
COL9A3-214ENST00000490398 SYPP08247 313 aa18.45■□□□□ 0.54
COL9A3-214ENST00000490398 RARAP10276 462 aa18.45■□□□□ 0.54
COL9A3-214ENST00000490398 CD59P13987 128 aa18.45■□□□□ 0.54
COL9A3-214ENST00000490398 DESP17661 470 aa18.45■□□□□ 0.54
COL9A3-214ENST00000490398 ETFBP38117 255 aa18.45■□□□□ 0.54
COL9A3-214ENST00000490398 CCR5P51681 352 aa18.45■□□□□ 0.54
COL9A3-214ENST00000490398 ATXN3P54252 364 aaPredicted RBP18.45■□□□□ 0.54
COL9A3-214ENST00000490398 SLC25A11Q02978 314 aaKnown RBP18.45■□□□□ 0.54
COL9A3-214ENST00000490398 MAPK8IP2Q13387 824 aaPredicted RBP18.45■□□□□ 0.54
COL9A3-214ENST00000490398 TRIM14Q14142 442 aa18.45■□□□□ 0.54
COL9A3-214ENST00000490398 CYTH1Q15438 398 aa18.45■□□□□ 0.54
COL9A3-214ENST00000490398 SLC18A3Q16572 532 aa18.45■□□□□ 0.54
COL9A3-214ENST00000490398 PSAPL1Q6NUJ1 521 aa18.45■□□□□ 0.54
COL9A3-214ENST00000490398 RFX8Q6ZV50 586 aa18.45■□□□□ 0.54
COL9A3-214ENST00000490398 GAS2L3Q86XJ1 694 aa18.45■□□□□ 0.54
COL9A3-214ENST00000490398 HSPH1Q92598 858 aa18.45■□□□□ 0.54
COL9A3-214ENST00000490398 ISG20Q96AZ6 181 aaKnown RBP18.45■□□□□ 0.54
COL9A3-214ENST00000490398 HEPHQ9BQS7 1158 aa18.45■□□□□ 0.54
COL9A3-214ENST00000490398 PDFQ9HBH1 243 aa18.45■□□□□ 0.54
COL9A3-214ENST00000490398 OSGEPQ9NPF4 335 aa18.45■□□□□ 0.54
COL9A3-214ENST00000490398 SPTLC3Q9NUV7 552 aa18.45■□□□□ 0.54
COL9A3-214ENST00000490398 ETNK2Q9NVF9 386 aa18.45■□□□□ 0.54
COL9A3-214ENST00000490398 DNAAF2Q9NVR5 837 aaKnown RBP18.45■□□□□ 0.54
COL9A3-214ENST00000490398 FNDC3AQ9Y2H6 1198 aaKnown RBP18.45■□□□□ 0.54
COL9A3-214ENST00000490398 CACNA1EQ15878 2313 aa18.44■□□□□ 0.54
COL9A3-214ENST00000490398 ASCC3Q8N3C0 2202 aaKnown RBP18.44■□□□□ 0.54
COL9A3-214ENST00000490398 INSIG1O15503 277 aa18.44■□□□□ 0.54
COL9A3-214ENST00000490398 SLC7A4O43246 635 aa18.44■□□□□ 0.54
COL9A3-214ENST00000490398 PRNPP04156 253 aa18.44■□□□□ 0.54
COL9A3-214ENST00000490398 RECQLP46063 649 aaPredicted RBP18.44■□□□□ 0.54
COL9A3-214ENST00000490398 PAPOLAP51003 745 aaKnown RBP18.44■□□□□ 0.54
COL9A3-214ENST00000490398 AFF3P51826 1226 aaKnown RBP18.44■□□□□ 0.54
COL9A3-214ENST00000490398 YBEYP58557 167 aaPredicted RBP18.44■□□□□ 0.54
COL9A3-214ENST00000490398 DPYSQ14117 519 aa18.44■□□□□ 0.54
COL9A3-214ENST00000490398 HLA-BQ31612 363 aa18.44■□□□□ 0.54
COL9A3-214ENST00000490398 PARP15Q460N3 678 aa18.44■□□□□ 0.54
COL9A3-214ENST00000490398 N4BP2L1Q5TBK1 243 aaPredicted RBP18.44■□□□□ 0.54
COL9A3-214ENST00000490398 AFMIDQ63HM1 303 aa18.44■□□□□ 0.54
COL9A3-214ENST00000490398 SARM1Q6SZW1 724 aa18.44■□□□□ 0.54
COL9A3-214ENST00000490398 PIP4P1Q86T03 277 aa18.44■□□□□ 0.54
COL9A3-214ENST00000490398 RYBPQ8N488 228 aaPredicted RBP18.44■□□□□ 0.54
COL9A3-214ENST00000490398 NIPA2Q8N8Q9 360 aa18.44■□□□□ 0.54
COL9A3-214ENST00000490398 ZNF564Q8TBZ8 553 aaPredicted RBP18.44■□□□□ 0.54
COL9A3-214ENST00000490398 KLK6Q92876 244 aa18.44■□□□□ 0.54
COL9A3-214ENST00000490398 CCDC114Q96M63 670 aa18.44■□□□□ 0.54
COL9A3-214ENST00000490398 CAMK1GQ96NX5 476 aa18.44■□□□□ 0.54
COL9A3-214ENST00000490398 ZDHHC6Q9H6R6 413 aa18.44■□□□□ 0.54
COL9A3-214ENST00000490398 LHX3Q9UBR4 397 aa18.44■□□□□ 0.54
COL9A3-214ENST00000490398 HPCAL4Q9UM19 191 aa18.44■□□□□ 0.54
COL9A3-214ENST00000490398 CA5BQ9Y2D0 317 aa18.44■□□□□ 0.54
COL9A3-214ENST00000490398 FARP1Q9Y4F1 1045 aaPredicted RBP18.44■□□□□ 0.54
COL9A3-214ENST00000490398 PLXNA2O75051 1894 aa18.43■□□□□ 0.54
COL9A3-214ENST00000490398 A0A1W2PR77 199 aa18.43■□□□□ 0.54
COL9A3-214ENST00000490398 LATO43561 262 aa18.43■□□□□ 0.54
COL9A3-214ENST00000490398 OPHN1O60890 802 aa18.43■□□□□ 0.54
COL9A3-214ENST00000490398 RNGTTO60942 597 aaKnown RBP18.43■□□□□ 0.54
COL9A3-214ENST00000490398 CD48P09326 243 aa18.43■□□□□ 0.54
COL9A3-214ENST00000490398 AMPD1P23109 780 aa18.43■□□□□ 0.54
COL9A3-214ENST00000490398 HTR7P34969 479 aa18.43■□□□□ 0.54
COL9A3-214ENST00000490398 NOVA1P51513 510 aaKnown RBP18.43■□□□□ 0.54
COL9A3-214ENST00000490398 FAM193AP78312 1265 aa18.43■□□□□ 0.54
COL9A3-214ENST00000490398 PIGHQ14442 188 aaPredicted RBP18.43■□□□□ 0.54
COL9A3-214ENST00000490398 DPYSL2Q16555 572 aa18.43■□□□□ 0.54
COL9A3-214ENST00000490398 ATP13A4Q4VNC1 1196 aa18.43■□□□□ 0.54
COL9A3-214ENST00000490398 PRAMEF14Q5SWL7 426 aa18.43■□□□□ 0.54
COL9A3-214ENST00000490398 ERN2Q76MJ5 926 aaKnown RBP18.43■□□□□ 0.54
COL9A3-214ENST00000490398 PARS2Q7L3T8 475 aaKnown RBP18.43■□□□□ 0.54
COL9A3-214ENST00000490398 PSTKQ8IV42 348 aaKnown RBP18.43■□□□□ 0.54
COL9A3-214ENST00000490398 OR2AP1Q8NGE2 309 aa18.43■□□□□ 0.54
COL9A3-214ENST00000490398 EXOC2Q96KP1 924 aa18.43■□□□□ 0.54
COL9A3-214ENST00000490398 HDAC8Q9BY41 377 aa18.43■□□□□ 0.54
COL9A3-214ENST00000490398 GAREM1Q9H706 876 aa18.43■□□□□ 0.54
COL9A3-214ENST00000490398 NHEJ1Q9H9Q4 299 aaPredicted RBP18.43■□□□□ 0.54
COL9A3-214ENST00000490398 STAU2Q9NUL3 570 aaKnown RBP eCLIP18.43■□□□□ 0.54
COL9A3-214ENST00000490398 IP6K2Q9UHH9 426 aa18.43■□□□□ 0.54
COL9A3-214ENST00000490398 ZFR2Q9UPR6 939 aaKnown RBP18.43■□□□□ 0.54
COL9A3-214ENST00000490398 ANKRD6Q9Y2G4 727 aa18.43■□□□□ 0.54
COL9A3-214ENST00000490398 ASPMQ8IZT6 3477 aa18.42■□□□□ 0.54
COL9A3-214ENST00000490398 CXorf51AA0A1B0GTR3 108 aa18.42■□□□□ 0.54
COL9A3-214ENST00000490398 A0A1W2PQU0 124 aa18.42■□□□□ 0.54
COL9A3-214ENST00000490398 SSU72P8A0A1W2PR75 194 aa18.42■□□□□ 0.54
COL9A3-214ENST00000490398 SPINT1O43278 529 aa18.42■□□□□ 0.54
COL9A3-214ENST00000490398 DAPK3O43293 454 aa18.42■□□□□ 0.54
COL9A3-214ENST00000490398 GSRP00390 522 aa18.42■□□□□ 0.54
COL9A3-214ENST00000490398 ABL2P42684 1182 aa18.42■□□□□ 0.54
COL9A3-214ENST00000490398 CTSKP43235 329 aa18.42■□□□□ 0.54
COL9A3-214ENST00000490398 GRIA4P48058 902 aa18.42■□□□□ 0.54
COL9A3-214ENST00000490398 NDST2P52849 883 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms