RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 ABCB4P21439 1286 aa9□□□□□ -0.97
USP4-213ENST00000488520 PRKCHP24723 683 aa9□□□□□ -0.97
USP4-213ENST00000488520 OXTRP30559 389 aa9□□□□□ -0.97
USP4-213ENST00000488520 RPL34P49207 117 aaKnown RBP9□□□□□ -0.97
USP4-213ENST00000488520 NAP1L1P55209 391 aaKnown RBP9□□□□□ -0.97
USP4-213ENST00000488520 SNRPNP63162 240 aaKnown RBP9□□□□□ -0.97
USP4-213ENST00000488520 IL9RQ01113 521 aa9□□□□□ -0.97
USP4-213ENST00000488520 CCDC173Q0VFZ6 552 aa9□□□□□ -0.97
USP4-213ENST00000488520 EFEMP1Q12805 493 aa9□□□□□ -0.97
USP4-213ENST00000488520 ZNF234Q14588 700 aa9□□□□□ -0.97
USP4-213ENST00000488520 PTPN20Q4JDL3 420 aa9□□□□□ -0.97
USP4-213ENST00000488520 IL27RAQ6UWB1 636 aa9□□□□□ -0.97
USP4-213ENST00000488520 FAM183BPQ6ZVS7 135 aa9□□□□□ -0.97
USP4-213ENST00000488520 BTLAQ7Z6A9 289 aa9□□□□□ -0.97
USP4-213ENST00000488520 KIAA1328Q86T90 577 aa9□□□□□ -0.97
USP4-213ENST00000488520 XYLT1Q86Y38 959 aa9□□□□□ -0.97
USP4-213ENST00000488520 LRRC8AQ8IWT6 810 aa9□□□□□ -0.97
USP4-213ENST00000488520 GALNT15Q8N3T1 639 aa9□□□□□ -0.97
USP4-213ENST00000488520 ZNF276Q8N554 614 aa9□□□□□ -0.97
USP4-213ENST00000488520 CADM4Q8NFZ8 388 aa9□□□□□ -0.97
USP4-213ENST00000488520 BAHD1Q8TBE0 780 aaPredicted RBP9□□□□□ -0.97
USP4-213ENST00000488520 UCMAQ8WVF2 138 aa9□□□□□ -0.97
USP4-213ENST00000488520 NDRG1Q92597 394 aaKnown RBP9□□□□□ -0.97
USP4-213ENST00000488520 EDEM1Q92611 657 aa9□□□□□ -0.97
USP4-213ENST00000488520 COL26A1Q96A83 441 aa9□□□□□ -0.97
USP4-213ENST00000488520 ZNF653Q96CK0 615 aa9□□□□□ -0.97
USP4-213ENST00000488520 BTBD6Q96KE9 485 aa9□□□□□ -0.97
USP4-213ENST00000488520 CDC6Q99741 560 aa9□□□□□ -0.97
USP4-213ENST00000488520 CIPCQ9C0C6 399 aa9□□□□□ -0.97
USP4-213ENST00000488520 ISCUQ9H1K1 167 aa9□□□□□ -0.97
USP4-213ENST00000488520 C6orf106Q9H6K1 298 aaPredicted RBP9□□□□□ -0.97
USP4-213ENST00000488520 CTTNBP2NLQ9P2B4 639 aa9□□□□□ -0.97
USP4-213ENST00000488520 CNOT8Q9UFF9 292 aaKnown RBP9□□□□□ -0.97
USP4-213ENST00000488520 RASAL2Q9UJF2 1139 aa9□□□□□ -0.97
USP4-213ENST00000488520 FBXO10Q9UK96 956 aa9□□□□□ -0.97
USP4-213ENST00000488520 CLEC4EQ9ULY5 219 aa9□□□□□ -0.97
USP4-213ENST00000488520 PAXBP1Q9Y5B6 917 aa9□□□□□ -0.97
USP4-213ENST00000488520 MGAQ8IWI9 3026 aa9□□□□□ -0.97
USP4-213ENST00000488520 ATMQ13315 3056 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 SLC12A8A0AV02 714 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 SIGLEC16A6NMB1 481 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 EIF3CLB5ME19 914 aaKnown RBP8.99□□□□□ -0.97
USP4-213ENST00000488520 TGFBR3LH3BV60 316 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 GRAP2O75791 330 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 NDUFA10O95299 355 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 F9P00740 461 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 CORO1AP31146 461 aaKnown RBP8.99□□□□□ -0.97
USP4-213ENST00000488520 SDC4P31431 198 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 ACSL1P33121 698 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 SCNN1AP37088 669 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 NOP2P46087 812 aaKnown RBP8.99□□□□□ -0.97
USP4-213ENST00000488520 HARS2P49590 506 aaKnown RBP8.99□□□□□ -0.97
USP4-213ENST00000488520 COPAP53621 1224 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 GALCP54803 685 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 CLDN6P56747 220 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 SUZ12Q15022 739 aaKnown RBP8.99□□□□□ -0.97
USP4-213ENST00000488520 KIF19Q2TAC6 998 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 C2CD6Q53TS8 623 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 FYB2Q5VWT5 728 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 E4F1Q66K89 784 aaPredicted RBP8.99□□□□□ -0.97
USP4-213ENST00000488520 DHRS13Q6UX07 377 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 DBX2Q6ZNG2 339 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 BEND5Q7L4P6 421 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 SYT9Q86SS6 491 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 UNC45BQ8IWX7 931 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 DEFB106AQ8N104 65 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 ZNF366Q8N895 744 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 CLEC4CQ8WTT0 213 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 EIF3CQ99613 913 aaKnown RBP8.99□□□□□ -0.97
USP4-213ENST00000488520 SLC30A3Q99726 388 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 NCAPGQ9BPX3 1015 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 DCLK3Q9C098 648 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 SPTLC3Q9NUV7 552 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.99□□□□□ -0.97
USP4-213ENST00000488520 ELOVL2Q9NXB9 296 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 MARCH2Q9P0N8 246 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 LCMT1Q9UIC8 334 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 ANKRD6Q9Y2G4 727 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 ZNF510Q9Y2H8 683 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 SLC27A6Q9Y2P4 619 aa8.99□□□□□ -0.97
USP4-213ENST00000488520 ASH1LQ9NR48 2969 aaKnown RBP8.98□□□□□ -0.97
USP4-213ENST00000488520 TENM4Q6N022 2769 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 SYNJ2BP-COX16A0A087WUM0 186 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 SOWAHDA6NJG2 315 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 H0Y8X5 98 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 MYO1FO00160 1098 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 PLK4O00444 970 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 ARHGAP6O43182 974 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 TNFSF14O43557 240 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 RNF8O76064 485 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 FSBPO95073 299 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 TMEM253P0C7T8 217 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 SLC2A3P11169 496 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 RRM1P23921 792 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 ITPKBP27987 946 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 ABCG1P45844 678 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 AFF3P51826 1226 aaKnown RBP8.98□□□□□ -0.97
USP4-213ENST00000488520 DEUP1Q05D60 604 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 C19orf57Q0VDD7 668 aa8.98□□□□□ -0.97
USP4-213ENST00000488520 KIF5AQ12840 1032 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms