RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 OR1N1Q8NGS0 311 aa3.38□□□□□ -1.87
SMC4-220ENST00000488017 TAS1R2Q8TE23 839 aa3.38□□□□□ -1.87
SMC4-220ENST00000488017 PYGO2Q9BRQ0 406 aa3.38□□□□□ -1.87
SMC4-220ENST00000488017 IFT27Q9BW83 186 aa3.38□□□□□ -1.87
SMC4-220ENST00000488017 EPS8L2Q9H6S3 715 aa3.38□□□□□ -1.87
SMC4-220ENST00000488017 SMARCAL1Q9NZC9 954 aa3.38□□□□□ -1.87
SMC4-220ENST00000488017 SLC25A13Q9UJS0 675 aa3.38□□□□□ -1.87
SMC4-220ENST00000488017 VSTM5A8MXK1 200 aa3.37□□□□□ -1.87
SMC4-220ENST00000488017 KPNA5O15131 536 aa3.37□□□□□ -1.87
SMC4-220ENST00000488017 FGF5P12034 268 aa3.37□□□□□ -1.87
SMC4-220ENST00000488017 FCGR2AP12318 317 aa3.37□□□□□ -1.87
SMC4-220ENST00000488017 PRPH2P23942 346 aa3.37□□□□□ -1.87
SMC4-220ENST00000488017 TYK2P29597 1187 aa3.37□□□□□ -1.87
SMC4-220ENST00000488017 STT3AP46977 705 aa3.37□□□□□ -1.87
SMC4-220ENST00000488017 HSD17B4P51659 736 aa3.37□□□□□ -1.87
SMC4-220ENST00000488017 NLRP5P59047 1200 aa3.37□□□□□ -1.87
SMC4-220ENST00000488017 KRT72Q14CN4 511 aa3.37□□□□□ -1.87
SMC4-220ENST00000488017 PPP2R5AQ15172 486 aa3.37□□□□□ -1.87
SMC4-220ENST00000488017 SYT16Q17RD7 645 aa3.37□□□□□ -1.87
SMC4-220ENST00000488017 ARL13BQ3SXY8 428 aa3.37□□□□□ -1.87
SMC4-220ENST00000488017 KLHL24Q6TFL4 600 aa3.37□□□□□ -1.87
SMC4-220ENST00000488017 SLC26A9Q7LBE3 791 aa3.37□□□□□ -1.87
SMC4-220ENST00000488017 WDR5BQ86VZ2 330 aa3.37□□□□□ -1.87
SMC4-220ENST00000488017 TXLNBQ8N3L3 684 aa3.37□□□□□ -1.87
SMC4-220ENST00000488017 MAPK1IP1LQ8NDC0 245 aa3.37□□□□□ -1.87
SMC4-220ENST00000488017 GRAPLQ8TC17 118 aaPredicted RBP3.37□□□□□ -1.87
SMC4-220ENST00000488017 DDX23Q9BUQ8 820 aaKnown RBP3.37□□□□□ -1.87
SMC4-220ENST00000488017 POU2F3Q9UKI9 436 aa3.37□□□□□ -1.87
SMC4-220ENST00000488017 THRAP3Q9Y2W1 955 aaKnown RBP3.37□□□□□ -1.87
SMC4-220ENST00000488017 hCG_2014768A0A024R1R8 64 aa3.36□□□□□ -1.87
SMC4-220ENST00000488017 GOLGA6CA6NDK9 693 aa3.36□□□□□ -1.87
SMC4-220ENST00000488017 GOLGA6BA6NDN3 693 aa3.36□□□□□ -1.87
SMC4-220ENST00000488017 SLC38A8A6NNN8 435 aa3.36□□□□□ -1.87
SMC4-220ENST00000488017 RASA4BC9J798 803 aa3.36□□□□□ -1.87
SMC4-220ENST00000488017 LARGE1O95461 756 aa3.36□□□□□ -1.87
SMC4-220ENST00000488017 DDAH2O95865 285 aa3.36□□□□□ -1.87
SMC4-220ENST00000488017 GOLGA6DP0CG33 693 aa3.36□□□□□ -1.87
SMC4-220ENST00000488017 CETPP11597 493 aa3.36□□□□□ -1.87
SMC4-220ENST00000488017 RCAN1P53805 252 aa3.36□□□□□ -1.87
SMC4-220ENST00000488017 ALDH18A1P54886 795 aaKnown RBP3.36□□□□□ -1.87
SMC4-220ENST00000488017 ZBTB17Q13105 803 aa3.36□□□□□ -1.87
SMC4-220ENST00000488017 DCAF6Q58WW2 860 aa3.36□□□□□ -1.87
SMC4-220ENST00000488017 FAM69BQ5VUD6 431 aa3.36□□□□□ -1.87
SMC4-220ENST00000488017 TMEM268Q5VZI3 342 aa3.36□□□□□ -1.87
SMC4-220ENST00000488017 RINT1Q6NUQ1 792 aa3.36□□□□□ -1.87
SMC4-220ENST00000488017 FBXO38Q6PIJ6 1188 aa3.36□□□□□ -1.87
SMC4-220ENST00000488017 TRIM74Q86UV6 250 aa3.36□□□□□ -1.87
SMC4-220ENST00000488017 TRIM73Q86UV7 250 aa3.36□□□□□ -1.87
SMC4-220ENST00000488017 NRSN1Q8IZ57 195 aa3.36□□□□□ -1.87
SMC4-220ENST00000488017 FAM76AQ8TAV0 307 aa3.36□□□□□ -1.87
SMC4-220ENST00000488017 LNX1Q8TBB1 728 aaPredicted RBP3.36□□□□□ -1.87
SMC4-220ENST00000488017 ZNF501Q96CX3 271 aaPredicted RBP3.36□□□□□ -1.87
SMC4-220ENST00000488017 TEFMQ96QE5 360 aaKnown RBP3.36□□□□□ -1.87
SMC4-220ENST00000488017 MSTO1Q9BUK6 570 aa3.36□□□□□ -1.87
SMC4-220ENST00000488017 HDHD5Q9BXW7 423 aa3.36□□□□□ -1.87
SMC4-220ENST00000488017 LHPPQ9H008 270 aa3.36□□□□□ -1.87
SMC4-220ENST00000488017 FBRSL1Q9HCM7 1045 aaKnown RBP3.36□□□□□ -1.87
SMC4-220ENST00000488017 GOLGA6AQ9NYA3 693 aa3.36□□□□□ -1.87
SMC4-220ENST00000488017 HERC5Q9UII4 1024 aaKnown RBP3.36□□□□□ -1.87
SMC4-220ENST00000488017 PHTF1Q9UMS5 762 aa3.36□□□□□ -1.87
SMC4-220ENST00000488017 A0A0A0MQY5 61 aa3.35□□□□□ -1.87
SMC4-220ENST00000488017 DDTLA6NHG4 134 aaPredicted RBP3.35□□□□□ -1.87
SMC4-220ENST00000488017 CHL1O00533 1208 aa3.35□□□□□ -1.87
SMC4-220ENST00000488017 PQBP1O60828 265 aaKnown RBP3.35□□□□□ -1.87
SMC4-220ENST00000488017 SLC5A1P13866 664 aa3.35□□□□□ -1.87
SMC4-220ENST00000488017 MCM3P25205 808 aa3.35□□□□□ -1.87
SMC4-220ENST00000488017 GSTM2P28161 218 aa3.35□□□□□ -1.87
SMC4-220ENST00000488017 CYP4A11Q02928 519 aa3.35□□□□□ -1.87
SMC4-220ENST00000488017 RNASELQ05823 741 aaKnown RBP3.35□□□□□ -1.87
SMC4-220ENST00000488017 RAVER1Q8IY67 606 aaKnown RBP3.35□□□□□ -1.87
SMC4-220ENST00000488017 ZNF441Q8N8Z8 693 aa3.35□□□□□ -1.87
SMC4-220ENST00000488017 GPT2Q8TD30 523 aa3.35□□□□□ -1.87
SMC4-220ENST00000488017 DCTN5Q9BTE1 182 aa3.35□□□□□ -1.87
SMC4-220ENST00000488017 MMTAG2Q9BU76 263 aaKnown RBP3.35□□□□□ -1.87
SMC4-220ENST00000488017 MOV10L1Q9BXT6 1211 aaKnown RBP3.35□□□□□ -1.87
SMC4-220ENST00000488017 NPFFR1Q9GZQ6 430 aa3.35□□□□□ -1.87
SMC4-220ENST00000488017 STARD7Q9NQZ5 370 aa3.35□□□□□ -1.87
SMC4-220ENST00000488017 TMEM51Q9NW97 253 aa3.35□□□□□ -1.87
SMC4-220ENST00000488017 PAM16Q9Y3D7 125 aa3.35□□□□□ -1.87
SMC4-220ENST00000488017 IGKV6D-41A0A0C4DH26 115 aa3.34□□□□□ -1.87
SMC4-220ENST00000488017 KIF28PB7ZC32 967 aa3.34□□□□□ -1.87
SMC4-220ENST00000488017 TIMM23O14925 209 aa3.34□□□□□ -1.87
SMC4-220ENST00000488017 VNN2O95498 520 aa3.34□□□□□ -1.87
SMC4-220ENST00000488017 ZNF10P21506 573 aaPredicted RBP3.34□□□□□ -1.87
SMC4-220ENST00000488017 SSTR2P30874 369 aa3.34□□□□□ -1.87
SMC4-220ENST00000488017 DCTDP32321 178 aa3.34□□□□□ -1.87
SMC4-220ENST00000488017 DPP6P42658 865 aa3.34□□□□□ -1.87
SMC4-220ENST00000488017 LIFRP42702 1097 aa3.34□□□□□ -1.87
SMC4-220ENST00000488017 GPR12P47775 334 aa3.34□□□□□ -1.87
SMC4-220ENST00000488017 SF3A3Q12874 501 aaKnown RBP eCLIP3.34□□□□□ -1.87
SMC4-220ENST00000488017 GFOD2Q3B7J2 385 aa3.34□□□□□ -1.87
SMC4-220ENST00000488017 ODR4Q5SWX8 454 aa3.34□□□□□ -1.87
SMC4-220ENST00000488017 MTFR2Q6P444 385 aa3.34□□□□□ -1.87
SMC4-220ENST00000488017 SPAG16Q8N0X2 631 aa3.34□□□□□ -1.87
SMC4-220ENST00000488017 CIARTQ8N365 385 aaPredicted RBP3.34□□□□□ -1.87
SMC4-220ENST00000488017 AADATQ8N5Z0 425 aa3.34□□□□□ -1.87
SMC4-220ENST00000488017 KBTBD3Q8NAB2 608 aa3.34□□□□□ -1.87
SMC4-220ENST00000488017 MECRQ9BV79 373 aa3.34□□□□□ -1.87
SMC4-220ENST00000488017 TM7SF3Q9NS93 570 aa3.34□□□□□ -1.87
SMC4-220ENST00000488017 SLC22A11Q9NSA0 550 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms