RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 PPM1HQ9ULR3 514 aa15.03■□□□□ -0
USP4-212ENST00000486549 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.03■□□□□ -0
USP4-212ENST00000486549 SHROOM3Q8TF72 1996 aa15.02■□□□□ -0
USP4-212ENST00000486549 KPNA3O00505 521 aaPredicted RBP15.02■□□□□ -0
USP4-212ENST00000486549 SPOPO43791 374 aa15.02■□□□□ -0
USP4-212ENST00000486549 C7P10643 843 aa15.02■□□□□ -0
USP4-212ENST00000486549 MAOBP27338 520 aa15.02■□□□□ -0
USP4-212ENST00000486549 ARSEP51690 589 aa15.02■□□□□ -0
USP4-212ENST00000486549 CCNHP51946 323 aaPredicted RBP15.02■□□□□ -0
USP4-212ENST00000486549 RHOAP61586 193 aa15.02■□□□□ -0
USP4-212ENST00000486549 TCEAL1Q15170 157 aa15.02■□□□□ -0
USP4-212ENST00000486549 ARSIQ5FYB1 569 aa15.02■□□□□ -0
USP4-212ENST00000486549 ATXN7L2Q5T6C5 722 aaPredicted RBP15.02■□□□□ -0
USP4-212ENST00000486549 DCAF12L1Q5VU92 463 aa15.02■□□□□ -0
USP4-212ENST00000486549 AFMIDQ63HM1 303 aa15.02■□□□□ -0
USP4-212ENST00000486549 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP15.02■□□□□ -0
USP4-212ENST00000486549 ARHGAP36Q6ZRI8 547 aa15.02■□□□□ -0
USP4-212ENST00000486549 FOXJ1Q92949 421 aa15.02■□□□□ -0
USP4-212ENST00000486549 ZNF419Q96HQ0 510 aaPredicted RBP15.02■□□□□ -0
USP4-212ENST00000486549 GOLPH3Q9H4A6 298 aa15.02■□□□□ -0
USP4-212ENST00000486549 SP110Q9HB58 689 aa15.02■□□□□ -0
USP4-212ENST00000486549 SGK2Q9HBY8 427 aa15.02■□□□□ -0
USP4-212ENST00000486549 TMEM74BQ9NUR3 256 aa15.02■□□□□ -0
USP4-212ENST00000486549 RCOR3Q9P2K3 495 aaPredicted RBP15.02■□□□□ -0
USP4-212ENST00000486549 HECAQ9UBI9 543 aaPredicted RBP15.02■□□□□ -0
USP4-212ENST00000486549 FZD4Q9ULV1 537 aa15.02■□□□□ -0
USP4-212ENST00000486549 REXO2Q9Y3B8 237 aaKnown RBP15.02■□□□□ -0
USP4-212ENST00000486549 CEP250Q9BV73 2442 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 CXorf51AA0A1B0GTR3 108 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 LRRD1A4D1F6 860 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 RCCD1A6NED2 376 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 PATE3B3GLJ2 98 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 RNF103O00237 685 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 BUB1BO60566 1050 aaPredicted RBP15.01□□□□□ -0.01
USP4-212ENST00000486549 PRAMEF11O60813 436 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 LEFTY1O75610 366 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 FSBPO95073 299 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 GSRP00390 522 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 PRNPP04156 253 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 KRT1P04264 644 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 COMTP21964 271 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 IL4RP24394 825 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 GKP32189 559 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 DRD3P35462 400 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 NAP1L1P55209 391 aaKnown RBP15.01□□□□□ -0.01
USP4-212ENST00000486549 SNRPD1P62314 119 aaKnown RBP15.01□□□□□ -0.01
USP4-212ENST00000486549 CNTN1Q12860 1018 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 PDK2Q15119 407 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 ANKRD20A8PQ5CZ79 823 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 WDR45BQ5MNZ6 344 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 SYCP2LQ5T4T6 812 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 KIAA1328Q86T90 577 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 SYT12Q8IV01 421 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 MAP7D3Q8IWC1 876 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 LZTR1Q8N653 840 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 CADM4Q8NFZ8 388 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 OR2AP1Q8NGE2 309 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 OR14C36Q8NHC7 312 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 FAM71BQ8TC56 605 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 CASKIN2Q8WXE0 1202 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 RAPGEF5Q92565 580 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 ISG20Q96AZ6 181 aaKnown RBP15.01□□□□□ -0.01
USP4-212ENST00000486549 ARRDC3Q96B67 414 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 EXOC2Q96KP1 924 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 HEPHQ9BQS7 1158 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 ZNF670Q9BS34 389 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 DESI2Q9BSY9 194 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 MIR1-1HGQ9H1L0 117 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 PDFQ9HBH1 243 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 DYRK4Q9NR20 520 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 PILRBQ9UKJ0 227 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 WASF2Q9Y6W5 498 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 DMXL1Q9Y485 3027 aa15.01□□□□□ -0.01
USP4-212ENST00000486549 A0A0A6YYK5 440 aaPredicted RBP15□□□□□ -0.01
USP4-212ENST00000486549 LRRC72A6NJI9 287 aa15□□□□□ -0.01
USP4-212ENST00000486549 METTL12A8MUP2 240 aa15□□□□□ -0.01
USP4-212ENST00000486549 KRIT1O00522 736 aa15□□□□□ -0.01
USP4-212ENST00000486549 KHNYNO15037 678 aaKnown RBP15□□□□□ -0.01
USP4-212ENST00000486549 MFSD11O43934 449 aa15□□□□□ -0.01
USP4-212ENST00000486549 IGSF6O95976 241 aa15□□□□□ -0.01
USP4-212ENST00000486549 CFIP05156 583 aa15□□□□□ -0.01
USP4-212ENST00000486549 SERPINB6P35237 376 aa15□□□□□ -0.01
USP4-212ENST00000486549 HOXD12P35452 270 aa15□□□□□ -0.01
USP4-212ENST00000486549 PI4KAP42356 2102 aa15□□□□□ -0.01
USP4-212ENST00000486549 SLC1A1P43005 524 aa15□□□□□ -0.01
USP4-212ENST00000486549 VAV2P52735 878 aa15□□□□□ -0.01
USP4-212ENST00000486549 ADPRHP54922 357 aa15□□□□□ -0.01
USP4-212ENST00000486549 HADHBP55084 474 aaKnown RBP15□□□□□ -0.01
USP4-212ENST00000486549 GSDMDP57764 484 aa15□□□□□ -0.01
USP4-212ENST00000486549 CYTH1Q15438 398 aa15□□□□□ -0.01
USP4-212ENST00000486549 INO80DQ53TQ3 878 aaPredicted RBP15□□□□□ -0.01
USP4-212ENST00000486549 ODF2Q5BJF6 829 aa15□□□□□ -0.01
USP4-212ENST00000486549 NCEH1Q6PIU2 408 aa15□□□□□ -0.01
USP4-212ENST00000486549 RABEPKQ7Z6M1 372 aa15□□□□□ -0.01
USP4-212ENST00000486549 RHOT1Q8IXI2 618 aa15□□□□□ -0.01
USP4-212ENST00000486549 ATPAF2Q8N5M1 289 aa15□□□□□ -0.01
USP4-212ENST00000486549 TMIEQ8NEW7 156 aa15□□□□□ -0.01
USP4-212ENST00000486549 PCDH19Q8TAB3 1148 aa15□□□□□ -0.01
USP4-212ENST00000486549 GDAP1L1Q96MZ0 367 aa15□□□□□ -0.01
USP4-212ENST00000486549 IPO11Q9UI26 975 aaKnown RBP15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms