RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 TUBB4AP04350 444 aa6.33□□□□□ -1.4
VPS50-212ENST00000476413 HEXAP06865 529 aa6.33□□□□□ -1.4
VPS50-212ENST00000476413 KLRC2P26717 231 aa6.33□□□□□ -1.4
VPS50-212ENST00000476413 PBX3P40426 434 aa6.33□□□□□ -1.4
VPS50-212ENST00000476413 NAP1L1P55209 391 aaKnown RBP6.33□□□□□ -1.4
VPS50-212ENST00000476413 SLC18A2Q05940 514 aa6.33□□□□□ -1.4
VPS50-212ENST00000476413 SERTAD4-AS1Q5TG53 156 aa6.33□□□□□ -1.4
VPS50-212ENST00000476413 ASPHD1Q5U4P2 390 aa6.33□□□□□ -1.4
VPS50-212ENST00000476413 FBXO42Q6P3S6 717 aa6.33□□□□□ -1.4
VPS50-212ENST00000476413 CYB5R4Q7L1T6 521 aa6.33□□□□□ -1.4
VPS50-212ENST00000476413 CCDC25Q86WR0 208 aa6.33□□□□□ -1.4
VPS50-212ENST00000476413 CADM4Q8NFZ8 388 aa6.33□□□□□ -1.4
VPS50-212ENST00000476413 GDPD5Q8WTR4 605 aa6.33□□□□□ -1.4
VPS50-212ENST00000476413 NOC3LQ8WTT2 800 aaKnown RBP6.33□□□□□ -1.4
VPS50-212ENST00000476413 CLMNQ96JQ2 1002 aa6.33□□□□□ -1.4
VPS50-212ENST00000476413 SH2D3AQ9BRG2 576 aa6.33□□□□□ -1.4
VPS50-212ENST00000476413 SCNM1Q9BWG6 230 aa6.33□□□□□ -1.4
VPS50-212ENST00000476413 KRTAP9-3Q9BYQ3 159 aa6.33□□□□□ -1.4
VPS50-212ENST00000476413 KRTAP4-11Q9BYQ6 195 aa6.33□□□□□ -1.4
VPS50-212ENST00000476413 ACTR5Q9H9F9 607 aaPredicted RBP6.33□□□□□ -1.4
VPS50-212ENST00000476413 SPAG4Q9NPE6 437 aa6.33□□□□□ -1.4
VPS50-212ENST00000476413 SEPT11Q9NVA2 429 aaKnown RBP6.33□□□□□ -1.4
VPS50-212ENST00000476413 KLHL13Q9P2N7 655 aa6.33□□□□□ -1.4
VPS50-212ENST00000476413 IPO11Q9UI26 975 aaKnown RBP6.33□□□□□ -1.4
VPS50-212ENST00000476413 LAMP3Q9UQV4 416 aa6.33□□□□□ -1.4
VPS50-212ENST00000476413 RPS6KL1Q9Y6S9 549 aa6.33□□□□□ -1.4
VPS50-212ENST00000476413 ARHGEF17Q96PE2 2063 aaPredicted RBP6.32□□□□□ -1.4
VPS50-212ENST00000476413 A0A1W2PQF6 199 aa6.32□□□□□ -1.4
VPS50-212ENST00000476413 ARHGAP10A1A4S6 786 aa6.32□□□□□ -1.4
VPS50-212ENST00000476413 SEC31AO94979 1220 aaKnown RBP6.32□□□□□ -1.4
VPS50-212ENST00000476413 SPARCP09486 303 aa6.32□□□□□ -1.4
VPS50-212ENST00000476413 GDF5P43026 501 aa6.32□□□□□ -1.4
VPS50-212ENST00000476413 CTCFP49711 727 aaPredicted RBP6.32□□□□□ -1.4
VPS50-212ENST00000476413 CLNS1AP54105 237 aaKnown RBP6.32□□□□□ -1.4
VPS50-212ENST00000476413 NHLH1Q02575 133 aa6.32□□□□□ -1.4
VPS50-212ENST00000476413 MAMLD1Q13495 774 aa6.32□□□□□ -1.4
VPS50-212ENST00000476413 CEP78Q5JTW2 689 aa6.32□□□□□ -1.4
VPS50-212ENST00000476413 TXNDC8Q6A555 127 aa6.32□□□□□ -1.4
VPS50-212ENST00000476413 TTLL5Q6EMB2 1281 aa6.32□□□□□ -1.4
VPS50-212ENST00000476413 CDC73Q6P1J9 531 aa6.32□□□□□ -1.4
VPS50-212ENST00000476413 SLC46A3Q7Z3Q1 461 aa6.32□□□□□ -1.4
VPS50-212ENST00000476413 DDIASQ8IXT1 998 aa6.32□□□□□ -1.4
VPS50-212ENST00000476413 CHFRQ96EP1 664 aa6.32□□□□□ -1.4
VPS50-212ENST00000476413 NSMCE4AQ9NXX6 385 aa6.32□□□□□ -1.4
VPS50-212ENST00000476413 CLIC5Q9NZA1 410 aa6.32□□□□□ -1.4
VPS50-212ENST00000476413 NCKIPSDQ9NZQ3 722 aa6.32□□□□□ -1.4
VPS50-212ENST00000476413 UTS2RQ9UKP6 389 aa6.32□□□□□ -1.4
VPS50-212ENST00000476413 INTS6Q9UL03 887 aaKnown RBP6.32□□□□□ -1.4
VPS50-212ENST00000476413 KCNE2Q9Y6J6 123 aa6.32□□□□□ -1.4
VPS50-212ENST00000476413 RSF1Q96T23 1441 aaPredicted RBP6.32□□□□□ -1.4
VPS50-212ENST00000476413 LIPT2A6NK58 231 aa6.31□□□□□ -1.4
VPS50-212ENST00000476413 AGAP14A8MT82 685 aa6.31□□□□□ -1.4
VPS50-212ENST00000476413 FAM157AC9JC47 383 aa6.31□□□□□ -1.4
VPS50-212ENST00000476413 RHODO00212 210 aa6.31□□□□□ -1.4
VPS50-212ENST00000476413 AHCYL1O43865 530 aa6.31□□□□□ -1.4
VPS50-212ENST00000476413 UGDHO60701 494 aa6.31□□□□□ -1.4
VPS50-212ENST00000476413 CCNDBP1O95273 360 aa6.31□□□□□ -1.4
VPS50-212ENST00000476413 FSHBP01225 129 aa6.31□□□□□ -1.4
VPS50-212ENST00000476413 IL1AP01583 271 aa6.31□□□□□ -1.4
VPS50-212ENST00000476413 PRKCGP05129 697 aa6.31□□□□□ -1.4
VPS50-212ENST00000476413 LCKP06239 509 aa6.31□□□□□ -1.4
VPS50-212ENST00000476413 ARL3P36405 182 aa6.31□□□□□ -1.4
VPS50-212ENST00000476413 HADHAP40939 763 aa6.31□□□□□ -1.4
VPS50-212ENST00000476413 ELLP55199 621 aaPredicted RBP6.31□□□□□ -1.4
VPS50-212ENST00000476413 OLR1P78380 273 aa6.31□□□□□ -1.4
VPS50-212ENST00000476413 MIDNQ504T8 468 aa6.31□□□□□ -1.4
VPS50-212ENST00000476413 AAGABQ6PD74 315 aa6.31□□□□□ -1.4
VPS50-212ENST00000476413 CCDC129Q6ZRS4 1044 aa6.31□□□□□ -1.4
VPS50-212ENST00000476413 FAM57BQ71RH2 274 aa6.31□□□□□ -1.4
VPS50-212ENST00000476413 ADGRF4Q8IZF3 695 aa6.31□□□□□ -1.4
VPS50-212ENST00000476413 GALNT16Q8N428 558 aa6.31□□□□□ -1.4
VPS50-212ENST00000476413 INTS12Q96CB8 462 aaKnown RBP6.31□□□□□ -1.4
VPS50-212ENST00000476413 NSUN4Q96CB9 384 aaKnown RBP6.31□□□□□ -1.4
VPS50-212ENST00000476413 SMYD2Q9NRG4 433 aa6.31□□□□□ -1.4
VPS50-212ENST00000476413 BABAM1Q9NWV8 329 aa6.31□□□□□ -1.4
VPS50-212ENST00000476413 MKLN1Q9UL63 735 aa6.31□□□□□ -1.4
VPS50-212ENST00000476413 ADAM18Q9Y3Q7 739 aa6.31□□□□□ -1.4
VPS50-212ENST00000476413 PCDHGB5Q9Y5G0 923 aa6.31□□□□□ -1.4
VPS50-212ENST00000476413 TRBV5-3A0A0A0MS03 114 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 KIR2DS5A0A0G2JLQ3 304 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 DDTLA6NHG4 134 aaPredicted RBP6.3□□□□□ -1.4
VPS50-212ENST00000476413 KIR2DS3K7RE56 304 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 TP73O15350 636 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 LIASO43766 372 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 CD63P08962 238 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 UNGP13051 313 aaPredicted RBP6.3□□□□□ -1.4
VPS50-212ENST00000476413 DPP6P42658 865 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 CPA2P48052 419 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 RARSP54136 660 aaKnown RBP6.3□□□□□ -1.4
VPS50-212ENST00000476413 CLDN2P57739 230 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 PMPCAQ10713 525 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 FOXF2Q12947 444 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 STIM1Q13586 685 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 RNPS1Q15287 305 aaKnown RBP6.3□□□□□ -1.4
VPS50-212ENST00000476413 MED22Q15528 200 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 TAF11Q15544 211 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 EDRF1Q3B7T1 1238 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 ENTPD8Q5MY95 495 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 ATG9BQ674R7 924 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 CYP20A1Q6UW02 462 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms