RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 SERPINC1P01008 464 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 IFNA2P01563 188 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 IL1AP01583 271 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 ALPLP05186 524 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 FGF2P09038 288 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 TNFRSF1BP20333 461 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 YWHAQP27348 245 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 TNFSF8P32971 234 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 GPD2P43304 727 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 NFIL3Q16649 462 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 FBXO43Q4G163 708 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 TRIM74Q86UV6 250 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 TRIM73Q86UV7 250 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 FAM217AQ8IXS0 508 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 KDM1BQ8NB78 822 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 ADAMTS15Q8TE58 950 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 WASF1Q92558 559 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 HSPH1Q92598 858 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 SLC25A28Q96A46 364 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 HVCN1Q96D96 273 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 EYA3Q99504 573 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 EIF2AK1Q9BQI3 630 aaKnown RBP4.27□□□□□ -1.73
USP40-209ENST00000452724 B3GNT4Q9C0J1 378 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 EPHX3Q9H6B9 360 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 ATP8A2Q9NTI2 1148 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 TBC1D14Q9P2M4 693 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 CNOT7Q9UIV1 285 aaKnown RBP4.27□□□□□ -1.73
USP40-209ENST00000452724 TBX20Q9UMR3 447 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 CNPY2Q9Y2B0 182 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 CCDC196A0A1B0GTZ2 297 aa4.26□□□□□ -1.73
USP40-209ENST00000452724 A0A1B0GVC2 190 aa4.26□□□□□ -1.73
USP40-209ENST00000452724 C17orf102A2RUQ5 167 aa4.26□□□□□ -1.73
USP40-209ENST00000452724 GAGE12JA6NER3 117 aa4.26□□□□□ -1.73
USP40-209ENST00000452724 DDTLA6NHG4 134 aaPredicted RBP4.26□□□□□ -1.73
USP40-209ENST00000452724 KIF1CO43896 1103 aaKnown RBP4.26□□□□□ -1.73
USP40-209ENST00000452724 TOMM40O96008 361 aa4.26□□□□□ -1.73
USP40-209ENST00000452724 ADAP00813 363 aa4.26□□□□□ -1.73
USP40-209ENST00000452724 KLKB1P03952 638 aa4.26□□□□□ -1.73
USP40-209ENST00000452724 DPP6P42658 865 aa4.26□□□□□ -1.73
USP40-209ENST00000452724 THBS3P49746 956 aa4.26□□□□□ -1.73
USP40-209ENST00000452724 TMPRSS3P57727 454 aa4.26□□□□□ -1.73
USP40-209ENST00000452724 TDGQ13569 410 aa4.26□□□□□ -1.73
USP40-209ENST00000452724 PTGR1Q14914 329 aa4.26□□□□□ -1.73
USP40-209ENST00000452724 ME3Q16798 604 aa4.26□□□□□ -1.73
USP40-209ENST00000452724 PRTGQ2VWP7 1150 aa4.26□□□□□ -1.73
USP40-209ENST00000452724 UBAP2Q5T6F2 1119 aaKnown RBP4.26□□□□□ -1.73
USP40-209ENST00000452724 MMS22LQ6ZRQ5 1243 aa4.26□□□□□ -1.73
USP40-209ENST00000452724 MON1AQ86VX9 555 aa4.26□□□□□ -1.73
USP40-209ENST00000452724 CAMK1DQ8IU85 385 aa4.26□□□□□ -1.73
USP40-209ENST00000452724 TMEM199Q8N511 208 aa4.26□□□□□ -1.73
USP40-209ENST00000452724 HORMAD2Q8N7B1 307 aa4.26□□□□□ -1.73
USP40-209ENST00000452724 DNAAF1Q8NEP3 725 aa4.26□□□□□ -1.73
USP40-209ENST00000452724 IL17REQ8NFR9 667 aa4.26□□□□□ -1.73
USP40-209ENST00000452724 RUFY2Q8WXA3 655 aa4.26□□□□□ -1.73
USP40-209ENST00000452724 ELP4Q96EB1 424 aa4.26□□□□□ -1.73
USP40-209ENST00000452724 THOC3Q96J01 351 aaKnown RBP4.26□□□□□ -1.73
USP40-209ENST00000452724 ZNF333Q96JL9 665 aa4.26□□□□□ -1.73
USP40-209ENST00000452724 ENTPD7Q9NQZ7 604 aa4.26□□□□□ -1.73
USP40-209ENST00000452724 GOLGA6L10A0A0M3HER8 536 aa4.25□□□□□ -1.73
USP40-209ENST00000452724 C17orf113A0A1B0GUU1 675 aa4.25□□□□□ -1.73
USP40-209ENST00000452724 CEP104O60308 925 aa4.25□□□□□ -1.73
USP40-209ENST00000452724 TBXAS1P24557 533 aaPredicted RBP4.25□□□□□ -1.73
USP40-209ENST00000452724 CDC25AP30304 524 aa4.25□□□□□ -1.73
USP40-209ENST00000452724 GPR68Q15743 365 aa4.25□□□□□ -1.73
USP40-209ENST00000452724 Q5PR19 223 aa4.25□□□□□ -1.73
USP40-209ENST00000452724 NAA35Q5VZE5 725 aa4.25□□□□□ -1.73
USP40-209ENST00000452724 SLC22A25Q6T423 547 aa4.25□□□□□ -1.73
USP40-209ENST00000452724 PARM1Q6UWI2 310 aa4.25□□□□□ -1.73
USP40-209ENST00000452724 SERPINA11Q86U17 422 aa4.25□□□□□ -1.73
USP40-209ENST00000452724 HEATR4Q86WZ0 1026 aa4.25□□□□□ -1.73
USP40-209ENST00000452724 ZDHHC23Q8IYP9 409 aa4.25□□□□□ -1.73
USP40-209ENST00000452724 CPXM2Q8N436 756 aa4.25□□□□□ -1.73
USP40-209ENST00000452724 TNIP2Q8NFZ5 429 aa4.25□□□□□ -1.73
USP40-209ENST00000452724 LPAR1Q92633 364 aa4.25□□□□□ -1.73
USP40-209ENST00000452724 INPP5DQ92835 1189 aa4.25□□□□□ -1.73
USP40-209ENST00000452724 ZBTB10Q96DT7 871 aa4.25□□□□□ -1.73
USP40-209ENST00000452724 WDR77Q9BQA1 342 aaPredicted RBP4.25□□□□□ -1.73
USP40-209ENST00000452724 INTS2Q9H0H0 1204 aaKnown RBP4.25□□□□□ -1.73
USP40-209ENST00000452724 SLC32A1Q9H598 525 aa4.25□□□□□ -1.73
USP40-209ENST00000452724 BEX4Q9NWD9 120 aaPredicted RBP4.25□□□□□ -1.73
USP40-209ENST00000452724 SEL1LQ9UBV2 794 aa4.25□□□□□ -1.73
USP40-209ENST00000452724 FAM157AC9JC47 383 aa4.24□□□□□ -1.73
USP40-209ENST00000452724 H0YGN5 161 aa4.24□□□□□ -1.73
USP40-209ENST00000452724 STMND1H3BQB6 276 aa4.24□□□□□ -1.73
USP40-209ENST00000452724 HSPB6O14558 160 aa4.24□□□□□ -1.73
USP40-209ENST00000452724 MYZAPP0CAP1 466 aa4.24□□□□□ -1.73
USP40-209ENST00000452724 T-ENOLP0DO92 83 aa4.24□□□□□ -1.73
USP40-209ENST00000452724 RFC1P35251 1148 aaPredicted RBP4.24□□□□□ -1.73
USP40-209ENST00000452724 LIFRP42702 1097 aa4.24□□□□□ -1.73
USP40-209ENST00000452724 KCNJ4P48050 445 aa4.24□□□□□ -1.73
USP40-209ENST00000452724 POLD2P49005 469 aa4.24□□□□□ -1.73
USP40-209ENST00000452724 HTR6P50406 440 aa4.24□□□□□ -1.73
USP40-209ENST00000452724 TUBP50607 506 aa4.24□□□□□ -1.73
USP40-209ENST00000452724 ARSFP54793 590 aa4.24□□□□□ -1.73
USP40-209ENST00000452724 RPP30P78346 268 aaKnown RBP4.24□□□□□ -1.73
USP40-209ENST00000452724 GALNT2Q10471 571 aa4.24□□□□□ -1.73
USP40-209ENST00000452724 CAMK1Q14012 370 aa4.24□□□□□ -1.73
USP40-209ENST00000452724 ODF3L2Q3SX64 289 aa4.24□□□□□ -1.73
USP40-209ENST00000452724 ZNF766Q5HY98 468 aa4.24□□□□□ -1.73
USP40-209ENST00000452724 HEPHL1Q6MZM0 1159 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms