RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 ADAT2Q7Z6V5 191 aaKnown RBP13.25□□□□□ -0.29
VPS33A-202ENST00000451053 ZC3H18Q86VM9 953 aaKnown RBP13.25□□□□□ -0.29
VPS33A-202ENST00000451053 C1orf210Q8IVY1 113 aa13.25□□□□□ -0.29
VPS33A-202ENST00000451053 CCDC13Q8IYE1 715 aa13.25□□□□□ -0.29
VPS33A-202ENST00000451053 MAML2Q8IZL2 1156 aaPredicted RBP13.25□□□□□ -0.29
VPS33A-202ENST00000451053 STK40Q8N2I9 435 aa13.25□□□□□ -0.29
VPS33A-202ENST00000451053 PCDH20Q8N6Y1 951 aaKnown RBP13.25□□□□□ -0.29
VPS33A-202ENST00000451053 SPATA4Q8NEY3 305 aa13.25□□□□□ -0.29
VPS33A-202ENST00000451053 TSTD1Q8NFU3 115 aa13.25□□□□□ -0.29
VPS33A-202ENST00000451053 CASKIN2Q8WXE0 1202 aa13.25□□□□□ -0.29
VPS33A-202ENST00000451053 ISG20Q96AZ6 181 aaKnown RBP13.25□□□□□ -0.29
VPS33A-202ENST00000451053 ZNF419Q96HQ0 510 aaPredicted RBP13.25□□□□□ -0.29
VPS33A-202ENST00000451053 RUNDC3BQ96NL0 473 aa13.25□□□□□ -0.29
VPS33A-202ENST00000451053 TM6SF2Q9BZW4 377 aa13.25□□□□□ -0.29
VPS33A-202ENST00000451053 CEP44Q9C0F1 390 aa13.25□□□□□ -0.29
VPS33A-202ENST00000451053 SLC6A17Q9H1V8 727 aa13.25□□□□□ -0.29
VPS33A-202ENST00000451053 PRMT8Q9NR22 394 aaPredicted RBP13.25□□□□□ -0.29
VPS33A-202ENST00000451053 A0A0C4DFX4 3053 aa13.24□□□□□ -0.29
VPS33A-202ENST00000451053 SHROOM3Q8TF72 1996 aa13.24□□□□□ -0.29
VPS33A-202ENST00000451053 TARSL2A2RTX5 802 aaKnown RBP13.24□□□□□ -0.29
VPS33A-202ENST00000451053 PPP1R12AO14974 1030 aaPredicted RBP13.24□□□□□ -0.29
VPS33A-202ENST00000451053 MUSKO15146 869 aa13.24□□□□□ -0.29
VPS33A-202ENST00000451053 MATN3O15232 486 aa13.24□□□□□ -0.29
VPS33A-202ENST00000451053 PAPSS2O95340 614 aaPredicted RBP13.24□□□□□ -0.29
VPS33A-202ENST00000451053 GABRG2P18507 467 aa13.24□□□□□ -0.29
VPS33A-202ENST00000451053 RGRP47804 291 aa13.24□□□□□ -0.29
VPS33A-202ENST00000451053 EIF3EP60228 445 aaKnown RBP13.24□□□□□ -0.29
VPS33A-202ENST00000451053 RFTN1Q14699 578 aaPredicted RBP13.24□□□□□ -0.29
VPS33A-202ENST00000451053 SIX1Q15475 284 aaPredicted RBP13.24□□□□□ -0.29
VPS33A-202ENST00000451053 CARD16Q5EG05 197 aa13.24□□□□□ -0.29
VPS33A-202ENST00000451053 ANO7Q6IWH7 933 aa13.24□□□□□ -0.29
VPS33A-202ENST00000451053 TIGD7Q6NT04 549 aaPredicted RBP13.24□□□□□ -0.29
VPS33A-202ENST00000451053 TSSK4Q6SA08 328 aa13.24□□□□□ -0.29
VPS33A-202ENST00000451053 DPY19L3Q6ZPD9 716 aa13.24□□□□□ -0.29
VPS33A-202ENST00000451053 BZW1Q7L1Q6 419 aaKnown RBP13.24□□□□□ -0.29
VPS33A-202ENST00000451053 METTL3Q86U44 580 aaKnown RBP13.24□□□□□ -0.29
VPS33A-202ENST00000451053 CACUL1Q86Y37 369 aa13.24□□□□□ -0.29
VPS33A-202ENST00000451053 PGBD5Q8N414 524 aa13.24□□□□□ -0.29
VPS33A-202ENST00000451053 C12orf50Q8NA57 414 aaPredicted RBP13.24□□□□□ -0.29
VPS33A-202ENST00000451053 TSEN2Q8NCE0 465 aaKnown RBP13.24□□□□□ -0.29
VPS33A-202ENST00000451053 CHST14Q8NCH0 376 aa13.24□□□□□ -0.29
VPS33A-202ENST00000451053 OR2A12Q8NGT7 310 aa13.24□□□□□ -0.29
VPS33A-202ENST00000451053 OR6K2Q8NGY2 324 aa13.24□□□□□ -0.29
VPS33A-202ENST00000451053 OR2T3Q8NH03 318 aa13.24□□□□□ -0.29
VPS33A-202ENST00000451053 TFB1MQ8WVM0 346 aaKnown RBP13.24□□□□□ -0.29
VPS33A-202ENST00000451053 HMGB4Q8WW32 186 aa13.24□□□□□ -0.29
VPS33A-202ENST00000451053 ATG4AQ8WYN0 398 aa13.24□□□□□ -0.29
VPS33A-202ENST00000451053 MAML1Q92585 1016 aa13.24□□□□□ -0.29
VPS33A-202ENST00000451053 FATE1Q969F0 183 aa13.24□□□□□ -0.29
VPS33A-202ENST00000451053 EXOC2Q96KP1 924 aa13.24□□□□□ -0.29
VPS33A-202ENST00000451053 QKIQ96PU8 341 aaKnown RBP eCLIP13.24□□□□□ -0.29
VPS33A-202ENST00000451053 FAM129BQ96TA1 746 aa13.24□□□□□ -0.29
VPS33A-202ENST00000451053 CINPQ9BW66 212 aaPredicted RBP13.24□□□□□ -0.29
VPS33A-202ENST00000451053 MKRN2Q9H000 416 aaKnown RBP13.24□□□□□ -0.29
VPS33A-202ENST00000451053 BRD8Q9H0E9 1235 aa13.24□□□□□ -0.29
VPS33A-202ENST00000451053 C10orf88Q9H8K7 445 aa13.24□□□□□ -0.29
VPS33A-202ENST00000451053 POLMQ9NP87 494 aaPredicted RBP13.24□□□□□ -0.29
VPS33A-202ENST00000451053 SMARCAL1Q9NZC9 954 aa13.24□□□□□ -0.29
VPS33A-202ENST00000451053 MUC3AQ02505 3323 aa13.24□□□□□ -0.29
VPS33A-202ENST00000451053 EFCAB8A8MWE9 144 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 H7C0C1 242 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 KCNK1O00180 336 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 PHF2O75151 1096 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 GJB3O75712 270 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 ZNF189O75820 626 aaPredicted RBP13.23□□□□□ -0.29
VPS33A-202ENST00000451053 GSRP00390 522 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 TDGF1P13385 188 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 CCNB1P14635 433 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 NDUFV2P19404 249 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 CHRNA3P32297 505 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 MMP13P45452 471 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 ATP5OP48047 213 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 PXNP49023 591 aaPredicted RBP13.23□□□□□ -0.29
VPS33A-202ENST00000451053 FNTAP49354 379 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 CCNHP51946 323 aaPredicted RBP13.23□□□□□ -0.29
VPS33A-202ENST00000451053 CSTF1Q05048 431 aaKnown RBP13.23□□□□□ -0.29
VPS33A-202ENST00000451053 DMWDQ09019 674 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 ZBTB17Q13105 803 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 XRCC4Q13426 336 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 ELAVL3Q14576 367 aaKnown RBP13.23□□□□□ -0.29
VPS33A-202ENST00000451053 ZNF235Q14590 738 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 CCNG2Q16589 344 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 CYP1B1Q16678 543 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 SLC45A4Q5BKX6 768 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 MARC1Q5VT66 337 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 TEX26Q8N6G2 289 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 OR2AP1Q8NGE2 309 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 NSMCE1Q8WV22 266 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 AP1M1Q9BXS5 423 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 CEP41Q9BYV8 373 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 NT5MQ9NPB1 228 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 SEPT10Q9P0V9 454 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 SEPT3Q9UH03 358 aa13.23□□□□□ -0.29
VPS33A-202ENST00000451053 FEZ2Q9UHY8 353 aaPredicted RBP13.23□□□□□ -0.29
VPS33A-202ENST00000451053 HACD1B0YJ81 288 aa13.22□□□□□ -0.29
VPS33A-202ENST00000451053 RNF103O00237 685 aa13.22□□□□□ -0.29
VPS33A-202ENST00000451053 MCF2LO15068 1137 aa13.22□□□□□ -0.29
VPS33A-202ENST00000451053 APBB3O95704 486 aa13.22□□□□□ -0.29
VPS33A-202ENST00000451053 IGSF6O95976 241 aa13.22□□□□□ -0.29
VPS33A-202ENST00000451053 JCHAINP01591 159 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms