RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 TBC1D3HP0C7X1 549 aa16.67■□□□□ 0.26
SF3A1-204ENST00000447376 IL1R2P27930 398 aa16.67■□□□□ 0.26
SF3A1-204ENST00000447376 SLC1A1P43005 524 aa16.67■□□□□ 0.26
SF3A1-204ENST00000447376 HADHBP55084 474 aaKnown RBP16.67■□□□□ 0.26
SF3A1-204ENST00000447376 NAP1L1P55209 391 aaKnown RBP16.67■□□□□ 0.26
SF3A1-204ENST00000447376 CDH6P55285 790 aa16.67■□□□□ 0.26
SF3A1-204ENST00000447376 RHOAP61586 193 aa16.67■□□□□ 0.26
SF3A1-204ENST00000447376 KIF5AQ12840 1032 aa16.67■□□□□ 0.26
SF3A1-204ENST00000447376 TEAD4Q15561 434 aa16.67■□□□□ 0.26
SF3A1-204ENST00000447376 IFI16Q16666 785 aaKnown RBP16.67■□□□□ 0.26
SF3A1-204ENST00000447376 RSPO4Q2I0M5 234 aaPredicted RBP16.67■□□□□ 0.26
SF3A1-204ENST00000447376 DAB2IPQ5VWQ8 1189 aa16.67■□□□□ 0.26
SF3A1-204ENST00000447376 TBC1D3GQ6DHY5 549 aa16.67■□□□□ 0.26
SF3A1-204ENST00000447376 TBC1D3CQ6IPX1 549 aa16.67■□□□□ 0.26
SF3A1-204ENST00000447376 LRRC8AQ8IWT6 810 aa16.67■□□□□ 0.26
SF3A1-204ENST00000447376 PLPP6Q8IY26 295 aa16.67■□□□□ 0.26
SF3A1-204ENST00000447376 TBC1D3Q8IZP1 549 aaPredicted RBP16.67■□□□□ 0.26
SF3A1-204ENST00000447376 KCTD6Q8NC69 237 aa16.67■□□□□ 0.26
SF3A1-204ENST00000447376 OR2AP1Q8NGE2 309 aa16.67■□□□□ 0.26
SF3A1-204ENST00000447376 SKA1Q96BD8 255 aa16.67■□□□□ 0.26
SF3A1-204ENST00000447376 CELF6Q96J87 481 aaKnown RBP16.67■□□□□ 0.26
SF3A1-204ENST00000447376 LRIG1Q96JA1 1093 aa16.67■□□□□ 0.26
SF3A1-204ENST00000447376 GDAP1L1Q96MZ0 367 aa16.67■□□□□ 0.26
SF3A1-204ENST00000447376 TM6SF2Q9BZW4 377 aa16.67■□□□□ 0.26
SF3A1-204ENST00000447376 C6orf106Q9H6K1 298 aaPredicted RBP16.67■□□□□ 0.26
SF3A1-204ENST00000447376 ZDHHC6Q9H6R6 413 aa16.67■□□□□ 0.26
SF3A1-204ENST00000447376 SP110Q9HB58 689 aa16.67■□□□□ 0.26
SF3A1-204ENST00000447376 TMEM74BQ9NUR3 256 aa16.67■□□□□ 0.26
SF3A1-204ENST00000447376 CWC15Q9P013 229 aaKnown RBP16.67■□□□□ 0.26
SF3A1-204ENST00000447376 RCOR3Q9P2K3 495 aaPredicted RBP16.67■□□□□ 0.26
SF3A1-204ENST00000447376 HECAQ9UBI9 543 aaPredicted RBP16.67■□□□□ 0.26
SF3A1-204ENST00000447376 UBA2Q9UBT2 640 aaPredicted RBP16.67■□□□□ 0.26
SF3A1-204ENST00000447376 EIF2B4Q9UI10 523 aaKnown RBP16.67■□□□□ 0.26
SF3A1-204ENST00000447376 FRYLO94915 3013 aa16.67■□□□□ 0.26
SF3A1-204ENST00000447376 NUP205Q92621 2012 aa16.67■□□□□ 0.26
SF3A1-204ENST00000447376 ZNF292O60281 2723 aa16.67■□□□□ 0.26
SF3A1-204ENST00000447376 SDK1Q7Z5N4 2213 aa16.66■□□□□ 0.26
SF3A1-204ENST00000447376 BTNL10A8MVZ5 291 aa16.66■□□□□ 0.26
SF3A1-204ENST00000447376 BCAT2O15382 392 aaPredicted RBP16.66■□□□□ 0.26
SF3A1-204ENST00000447376 PTMAP06454 111 aaKnown RBP16.66■□□□□ 0.26
SF3A1-204ENST00000447376 CCNHP51946 323 aaPredicted RBP16.66■□□□□ 0.26
SF3A1-204ENST00000447376 SLC25A11Q02978 314 aaKnown RBP16.66■□□□□ 0.26
SF3A1-204ENST00000447376 PUM1Q14671 1186 aaKnown RBP eCLIP16.66■□□□□ 0.263e-6■□□□□ 9.3
SF3A1-204ENST00000447376 PDK2Q15119 407 aa16.66■□□□□ 0.26
SF3A1-204ENST00000447376 POM121L1PQ3SYA9 428 aa16.66■□□□□ 0.26
SF3A1-204ENST00000447376 ARSIQ5FYB1 569 aa16.66■□□□□ 0.26
SF3A1-204ENST00000447376 KIAA0895LQ68EN5 471 aa16.66■□□□□ 0.26
SF3A1-204ENST00000447376 TCEAL6Q6IPX3 200 aa16.66■□□□□ 0.26
SF3A1-204ENST00000447376 NCEH1Q6PIU2 408 aa16.66■□□□□ 0.26
SF3A1-204ENST00000447376 LEKR1Q6ZMV7 388 aa16.66■□□□□ 0.26
SF3A1-204ENST00000447376 DPY19L3Q6ZPD9 716 aa16.66■□□□□ 0.26
SF3A1-204ENST00000447376 CYP4V2Q6ZWL3 525 aaPredicted RBP16.66■□□□□ 0.26
SF3A1-204ENST00000447376 POLNQ7Z5Q5 900 aa16.66■□□□□ 0.26
SF3A1-204ENST00000447376 ADAT2Q7Z6V5 191 aaKnown RBP16.66■□□□□ 0.26
SF3A1-204ENST00000447376 AADATQ8N5Z0 425 aa16.66■□□□□ 0.26
SF3A1-204ENST00000447376 ACRBPQ8NEB7 543 aa16.66■□□□□ 0.26
SF3A1-204ENST00000447376 NSMCE1Q8WV22 266 aa16.66■□□□□ 0.26
SF3A1-204ENST00000447376 DNASE2BQ8WZ79 361 aa16.66■□□□□ 0.26
SF3A1-204ENST00000447376 TCEAL3Q969E4 200 aa16.66■□□□□ 0.26
SF3A1-204ENST00000447376 RTKNQ9BST9 563 aa16.66■□□□□ 0.26
SF3A1-204ENST00000447376 CALN1Q9BXU9 219 aa16.66■□□□□ 0.26
SF3A1-204ENST00000447376 LRRC19Q9H756 370 aa16.66■□□□□ 0.26
SF3A1-204ENST00000447376 TMEM9BQ9NQ34 198 aa16.66■□□□□ 0.26
SF3A1-204ENST00000447376 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.66■□□□□ 0.26
SF3A1-204ENST00000447376 LNP1A1A4G5 178 aa16.65■□□□□ 0.26
SF3A1-204ENST00000447376 PATE3B3GLJ2 98 aa16.65■□□□□ 0.26
SF3A1-204ENST00000447376 KRIT1O00522 736 aa16.65■□□□□ 0.26
SF3A1-204ENST00000447376 PJA2O43164 708 aa16.65■□□□□ 0.26
SF3A1-204ENST00000447376 LEFTY1O75610 366 aa16.65■□□□□ 0.26
SF3A1-204ENST00000447376 TMCC1O94876 653 aa16.65■□□□□ 0.26
SF3A1-204ENST00000447376 POP4O95707 220 aaKnown RBP16.65■□□□□ 0.26
SF3A1-204ENST00000447376 CD27P26842 260 aa16.65■□□□□ 0.26
SF3A1-204ENST00000447376 MAOBP27338 520 aa16.65■□□□□ 0.26
SF3A1-204ENST00000447376 PAPOLAP51003 745 aaKnown RBP16.65■□□□□ 0.26
SF3A1-204ENST00000447376 LIMK1P53667 647 aa16.65■□□□□ 0.26
SF3A1-204ENST00000447376 ADPRHP54922 357 aa16.65■□□□□ 0.26
SF3A1-204ENST00000447376 CNTN1Q12860 1018 aa16.65■□□□□ 0.26
SF3A1-204ENST00000447376 DPYSQ14117 519 aa16.65■□□□□ 0.26
SF3A1-204ENST00000447376 GRM3Q14832 879 aa16.65■□□□□ 0.26
SF3A1-204ENST00000447376 FBXL19Q6PCT2 694 aa16.65■□□□□ 0.26
SF3A1-204ENST00000447376 BBS5Q8N3I7 341 aa16.65■□□□□ 0.26
SF3A1-204ENST00000447376 ZCCHC9Q8N567 271 aaKnown RBP16.65■□□□□ 0.26
SF3A1-204ENST00000447376 BIRC7Q96CA5 298 aa16.65■□□□□ 0.26
SF3A1-204ENST00000447376 CSPG4P5Q96PW8 444 aa16.65■□□□□ 0.26
SF3A1-204ENST00000447376 OSBPL1AQ9BXW6 950 aa16.65■□□□□ 0.26
SF3A1-204ENST00000447376 TSGA10Q9BZW7 698 aa16.65■□□□□ 0.26
SF3A1-204ENST00000447376 NOL6Q9H6R4 1146 aaKnown RBP16.65■□□□□ 0.26
SF3A1-204ENST00000447376 PCDH18Q9HCL0 1135 aa16.65■□□□□ 0.26
SF3A1-204ENST00000447376 PREBQ9HCU5 417 aa16.65■□□□□ 0.26
SF3A1-204ENST00000447376 SERGEFQ9UGK8 458 aa16.65■□□□□ 0.26
SF3A1-204ENST00000447376 SARDHQ9UL12 918 aa16.65■□□□□ 0.26
SF3A1-204ENST00000447376 REXO2Q9Y3B8 237 aaKnown RBP16.65■□□□□ 0.26
SF3A1-204ENST00000447376 WDR87Q6ZQQ6 2873 aa16.65■□□□□ 0.26
SF3A1-204ENST00000447376 TNRC6BQ9UPQ9 1833 aaKnown RBP16.64■□□□□ 0.25
SF3A1-204ENST00000447376 PLRG1O43660 514 aaKnown RBP16.64■□□□□ 0.25
SF3A1-204ENST00000447376 SPOPO43791 374 aa16.64■□□□□ 0.25
SF3A1-204ENST00000447376 GDF9O60383 454 aa16.64■□□□□ 0.25
SF3A1-204ENST00000447376 TCF4P15884 667 aa16.64■□□□□ 0.25
SF3A1-204ENST00000447376 DRD3P35462 400 aa16.64■□□□□ 0.25
SF3A1-204ENST00000447376 NUDT1P36639 197 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms