RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 ELMO2Q96JJ3 720 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 GLT1D1Q96MS3 346 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 PRDM16Q9HAZ2 1276 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 STARD7Q9NQZ5 370 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 TXLNGQ9NUQ3 528 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 PDCD11Q14690 1871 aaKnown RBP8.5□□□□□ -1.05
CD44-208ENST00000428726 CASP8AP2Q9UKL3 1982 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 A0A0U1RQF3 1178 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 ADAMTS4O75173 837 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 HSPA4LO95757 839 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 PCSK1P29120 753 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 CYP2C18P33260 490 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 SARNPP82979 210 aaKnown RBP8.5□□□□□ -1.05
CD44-208ENST00000428726 SLC18A2Q05940 514 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 MPP3Q13368 585 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 SEMA5AQ13591 1074 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 SLC9B1Q4ZJI4 515 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 TEX44Q53QW1 395 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 CFAP157Q5JU67 520 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 RTP2Q5QGT7 225 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 LIMS2Q7Z4I7 341 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 PSTKQ8IV42 348 aaKnown RBP8.5□□□□□ -1.05
CD44-208ENST00000428726 EFHBQ8N7U6 833 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.5□□□□□ -1.05
CD44-208ENST00000428726 PHC3Q8NDX5 983 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 ZNF398Q8TD17 642 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 CDKL2Q92772 493 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 APBB2Q92870 758 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 WBP2Q969T9 261 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 OR52B2Q96RD2 323 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 GPBP1L1Q9HC44 474 aaPredicted RBP8.5□□□□□ -1.05
CD44-208ENST00000428726 UTP6Q9NYH9 597 aaKnown RBP8.5□□□□□ -1.05
CD44-208ENST00000428726 ZNF180Q9UJW8 692 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 CDY1Q9Y6F8 540 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 ZNF236Q9UL36 1845 aa8.5□□□□□ -1.05
CD44-208ENST00000428726 FAM159BA6NKW6 160 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 TBKBP1A7MCY6 615 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 GJB5O95377 273 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 BPGMP07738 259 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 TPBGLP0DKB5 382 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 ITGB6P18564 788 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 TPSB2P20231 275 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 PGM1P36871 562 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 ARSDP51689 593 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 PKNOX1P55347 436 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 TPSAB1Q15661 275 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 ANO4Q32M45 955 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 VARS2Q5ST30 1063 aaKnown RBP8.49□□□□□ -1.05
CD44-208ENST00000428726 PIK3R6Q5UE93 754 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 MAVSQ7Z434 540 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 MFSD6LQ8IWD5 586 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 HS6ST3Q8IZP7 471 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 NUDT8Q8WV74 236 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 FBXO32Q969P5 355 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 VPS39Q96JC1 886 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 RPL10LQ96L21 214 aaKnown RBP8.49□□□□□ -1.05
CD44-208ENST00000428726 CATSPER2Q96P56 530 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 IL1RL2Q9HB29 575 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 TRPC7Q9HCX4 862 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 RCOR3Q9P2K3 495 aaPredicted RBP8.49□□□□□ -1.05
CD44-208ENST00000428726 IPO11Q9UI26 975 aaKnown RBP8.49□□□□□ -1.05
CD44-208ENST00000428726 UBA6A0AVT1 1052 aaPredicted RBP8.49□□□□□ -1.05
CD44-208ENST00000428726 CCDC189A1A4V9 331 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 HACD1B0YJ81 288 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 FAM155AB1AL88 458 aaPredicted RBP8.49□□□□□ -1.05
CD44-208ENST00000428726 E9PAM4 449 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 PROCP04070 461 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 LINGO3P0C6S8 592 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 RALBP11234 206 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 ETS2P15036 469 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 KCNA5P22460 613 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 PRKCHP24723 683 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 CCR1P32246 355 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 CDKN1CP49918 316 aaPredicted RBP8.49□□□□□ -1.05
CD44-208ENST00000428726 SP3Q02447 781 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 TUSC3Q13454 348 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 PCLAFQ15004 111 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 GEN1Q17RS7 908 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 PARP6Q2NL67 630 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 ACSBG2Q5FVE4 666 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 ANO7Q6IWH7 933 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 CHSY1Q86X52 802 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 CCNJLQ8IV13 435 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 ZNF512Q96ME7 567 aaPredicted RBP8.49□□□□□ -1.05
CD44-208ENST00000428726 SMG9Q9H0W8 520 aaKnown RBP8.49□□□□□ -1.05
CD44-208ENST00000428726 RNPEPL1Q9HAU8 725 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 PRM3Q9NNZ6 103 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 GTSE1Q9NYZ3 720 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 GMPR2Q9P2T1 348 aaKnown RBP8.49□□□□□ -1.05
CD44-208ENST00000428726 CDH9Q9ULB4 789 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 FAM50BQ9Y247 325 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 ARL5AQ9Y689 179 aa8.49□□□□□ -1.05
CD44-208ENST00000428726 ZCWPW2A0A1B0GU75 182 aa8.48□□□□□ -1.05
CD44-208ENST00000428726 GSRP00390 522 aa8.48□□□□□ -1.05
CD44-208ENST00000428726 FAM163BP0C2L3 166 aa8.48□□□□□ -1.05
CD44-208ENST00000428726 DHRS4L1P0CG22 281 aa8.48□□□□□ -1.05
CD44-208ENST00000428726 CPA3P15088 417 aa8.48□□□□□ -1.05
CD44-208ENST00000428726 LRPAP1P30533 357 aa8.48□□□□□ -1.05
CD44-208ENST00000428726 SCNN1BP51168 640 aa8.48□□□□□ -1.05
CD44-208ENST00000428726 PITRM1Q5JRX3 1037 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms