RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 CYTH1Q15438 398 aa10.8□□□□□ -0.68
TCOF1-204ENST00000427724 CHI3L2Q15782 390 aa10.8□□□□□ -0.68
TCOF1-204ENST00000427724 PTCRAQ6ISU1 281 aaPredicted RBP10.8□□□□□ -0.68
TCOF1-204ENST00000427724 PPWD1Q96BP3 646 aaKnown RBP10.8□□□□□ -0.68
TCOF1-204ENST00000427724 ZDHHC18Q9NUE0 388 aa10.8□□□□□ -0.68
TCOF1-204ENST00000427724 GTSE1Q9NYZ3 720 aa10.8□□□□□ -0.68
TCOF1-204ENST00000427724 PKD2L2Q9NZM6 624 aa10.8□□□□□ -0.68
TCOF1-204ENST00000427724 SUN2Q9UH99 717 aa10.8□□□□□ -0.68
TCOF1-204ENST00000427724 SLC13A4Q9UKG4 626 aa10.8□□□□□ -0.68
TCOF1-204ENST00000427724 LZTS1Q9Y250 596 aa10.8□□□□□ -0.68
TCOF1-204ENST00000427724 INVSQ9Y283 1065 aa10.8□□□□□ -0.68
TCOF1-204ENST00000427724 LRRC72A6NJI9 287 aa10.8□□□□□ -0.68
TCOF1-204ENST00000427724 MTA2O94776 668 aa10.8□□□□□ -0.68
TCOF1-204ENST00000427724 CRTAMO95727 393 aa10.8□□□□□ -0.68
TCOF1-204ENST00000427724 SNRPAP09012 282 aaKnown RBP10.8□□□□□ -0.68
TCOF1-204ENST00000427724 ERVK-10P10266 1014 aa10.8□□□□□ -0.68
TCOF1-204ENST00000427724 MYL2P10916 166 aa10.8□□□□□ -0.68
TCOF1-204ENST00000427724 TPH1P17752 444 aa10.8□□□□□ -0.68
TCOF1-204ENST00000427724 PHEXP78562 749 aa10.8□□□□□ -0.68
TCOF1-204ENST00000427724 POU6F1Q14863 301 aa10.8□□□□□ -0.68
TCOF1-204ENST00000427724 LINGO4Q6UY18 593 aa10.8□□□□□ -0.68
TCOF1-204ENST00000427724 FAM81AQ8TBF8 368 aa10.8□□□□□ -0.68
TCOF1-204ENST00000427724 SIPA1Q96FS4 1042 aa10.8□□□□□ -0.68
TCOF1-204ENST00000427724 ELMO2Q96JJ3 720 aa10.8□□□□□ -0.68
TCOF1-204ENST00000427724 FEM1CQ96JP0 617 aa10.8□□□□□ -0.68
TCOF1-204ENST00000427724 TBCBQ99426 244 aa10.8□□□□□ -0.68
TCOF1-204ENST00000427724 ZCCHC2Q9C0B9 1178 aaKnown RBP10.8□□□□□ -0.68
TCOF1-204ENST00000427724 MID2Q9UJV3 735 aa10.8□□□□□ -0.68
TCOF1-204ENST00000427724 SQORQ9Y6N5 450 aa10.8□□□□□ -0.68
TCOF1-204ENST00000427724 FAM155AB1AL88 458 aaPredicted RBP10.79□□□□□ -0.68
TCOF1-204ENST00000427724 PYGBP11216 843 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 STX3Q13277 289 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 MAMLD1Q13495 774 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 SLC44A4Q53GD3 710 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 CWF19L1Q69YN2 538 aaKnown RBP10.79□□□□□ -0.68
TCOF1-204ENST00000427724 PDE12Q6L8Q7 609 aaKnown RBP10.79□□□□□ -0.68
TCOF1-204ENST00000427724 MRNIPQ6NTE8 343 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 USP45Q70EL2 814 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 LRRC6Q86X45 466 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 ZCCHC9Q8N567 271 aaKnown RBP10.79□□□□□ -0.68
TCOF1-204ENST00000427724 CELF5Q8N6W0 485 aaKnown RBP10.79□□□□□ -0.68
TCOF1-204ENST00000427724 MBOAT7Q96N66 472 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 GORASP1Q9BQQ3 440 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 TASP1Q9H6P5 420 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 PPCSQ9HAB8 311 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 DMAC2Q9NW81 257 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 MTO1Q9Y2Z2 717 aaKnown RBP10.79□□□□□ -0.68
TCOF1-204ENST00000427724 NFS1Q9Y697 457 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 LOC100653049A0A140TA62 436 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 GRM6O15303 877 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 ATG13O75143 517 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 KRT34O76011 436 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 SRP72O76094 671 aaKnown RBP10.79□□□□□ -0.68
TCOF1-204ENST00000427724 UNC5CO95185 931 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 EPCAMP16422 314 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 ESRRGP62508 458 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 RIPK1Q13546 671 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 BMPR2Q13873 1038 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 TCEAL5Q5H9L2 206 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 IRGCQ6NXR0 463 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 LINC00523Q86TU6 105 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 SETD7Q8WTS6 366 aaKnown RBP10.79□□□□□ -0.68
TCOF1-204ENST00000427724 SPOCK2Q92563 424 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 E2F7Q96AV8 911 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 FUBP3Q96I24 572 aaKnown RBP eCLIP10.79□□□□□ -0.68
TCOF1-204ENST00000427724 IL12RB2Q99665 862 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 ATP13A3Q9H7F0 1226 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 PIH1D1Q9NWS0 290 aaKnown RBP10.79□□□□□ -0.68
TCOF1-204ENST00000427724 KLHL3Q9UH77 587 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 RPS6KL1Q9Y6S9 549 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 HNRNPCL1O60812 293 aaKnown RBP10.79□□□□□ -0.68
TCOF1-204ENST00000427724 PAGE1O75459 146 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 CNPP09543 421 aaKnown RBP10.79□□□□□ -0.68
TCOF1-204ENST00000427724 STIP1P31948 543 aaKnown RBP10.79□□□□□ -0.68
TCOF1-204ENST00000427724 MAXP61244 160 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 TEAD4Q15561 434 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 VITQ6UXI7 678 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.79□□□□□ -0.68
TCOF1-204ENST00000427724 APLFQ8IW19 511 aaPredicted RBP10.79□□□□□ -0.68
TCOF1-204ENST00000427724 DAW1Q8N136 415 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 PHOSPHO2Q8TCD6 241 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 CALML6Q8TD86 181 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 ZNF75CPQ92670 426 aaPredicted RBP10.79□□□□□ -0.68
TCOF1-204ENST00000427724 NTPCRQ9BSD7 190 aaKnown RBP10.79□□□□□ -0.68
TCOF1-204ENST00000427724 TBC1D10AQ9BXI6 508 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 PCDH9Q9HC56 1237 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 DDX18Q9NVP1 670 aaKnown RBP10.79□□□□□ -0.68
TCOF1-204ENST00000427724 BCAP29Q9UHQ4 241 aa10.79□□□□□ -0.68
TCOF1-204ENST00000427724 ARHGAP10A1A4S6 786 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 PIRTP0C851 137 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 CHRNB2P17787 502 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 ATP6V1C1P21283 382 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 ELK3P41970 407 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 SULT2A1Q06520 285 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 ART3Q13508 389 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 CAMK2GQ13555 558 aaPredicted RBP10.78□□□□□ -0.68
TCOF1-204ENST00000427724 PTAR1Q7Z6K3 402 aaPredicted RBP10.78□□□□□ -0.68
TCOF1-204ENST00000427724 CXorf38Q8TB03 319 aa10.78□□□□□ -0.68
TCOF1-204ENST00000427724 EMID1Q96A84 441 aaPredicted RBP10.78□□□□□ -0.68
TCOF1-204ENST00000427724 TMEM159Q96B96 161 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms