RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 ACADSBP45954 432 aa13.2□□□□□ -0.3
LINC00339-202ENST00000416769 CFHR1Q03591 330 aa13.2□□□□□ -0.3
LINC00339-202ENST00000416769 SULT2A1Q06520 285 aa13.2□□□□□ -0.3
LINC00339-202ENST00000416769 LY6DQ14210 128 aa13.2□□□□□ -0.3
LINC00339-202ENST00000416769 ZNF683Q8IZ20 524 aa13.2□□□□□ -0.3
LINC00339-202ENST00000416769 C1orf131Q8NDD1 294 aaKnown RBP13.2□□□□□ -0.3
LINC00339-202ENST00000416769 RNF34Q969K3 372 aa13.2□□□□□ -0.3
LINC00339-202ENST00000416769 NAA15Q9BXJ9 866 aaKnown RBP13.2□□□□□ -0.3
LINC00339-202ENST00000416769 SIK2Q9H0K1 926 aa13.2□□□□□ -0.3
LINC00339-202ENST00000416769 GANQ9H2C0 597 aa13.2□□□□□ -0.3
LINC00339-202ENST00000416769 PIGVQ9NUD9 493 aa13.2□□□□□ -0.3
LINC00339-202ENST00000416769 KLHL11Q9NVR0 708 aa13.2□□□□□ -0.3
LINC00339-202ENST00000416769 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.2□□□□□ -0.32e-6■■□□□ 13.8
LINC00339-202ENST00000416769 MPP6Q9NZW5 540 aa13.2□□□□□ -0.3
LINC00339-202ENST00000416769 VPS51Q9UID3 782 aa13.2□□□□□ -0.3
LINC00339-202ENST00000416769 DNAJC12Q9UKB3 198 aa13.2□□□□□ -0.3
LINC00339-202ENST00000416769 PIEZO2Q9H5I5 2752 aa13.2□□□□□ -0.3
LINC00339-202ENST00000416769 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.19□□□□□ -0.3
LINC00339-202ENST00000416769 TEX51A0A1B0GUA7 166 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 POM121BA6NF01 834 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 C1QTNF3-AMACRE9PGA6 284 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 ZNF821O75541 412 aaPredicted RBP13.19□□□□□ -0.3
LINC00339-202ENST00000416769 CKMT1AP12532 417 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 TGM2P21980 687 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 CDC25BP30305 580 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 CCR1P32246 355 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 POLR2FP61218 127 aaKnown RBP13.19□□□□□ -0.3
LINC00339-202ENST00000416769 CDK17Q00537 523 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 ZNF177Q13360 481 aaPredicted RBP13.19□□□□□ -0.3
LINC00339-202ENST00000416769 SLC12A1Q13621 1099 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 ARHGAP44Q17R89 818 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 PTPN20Q4JDL3 420 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 RABGAP1LQ5R372 815 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 FAM46CQ5VWP2 391 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 SPECC1LQ69YQ0 1117 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 OLFML1Q6UWY5 402 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 TFAP2DQ7Z6R9 452 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 DSG4Q86SJ6 1040 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 ZNF605Q86T29 641 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 HORMAD1Q86X24 394 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 OR7D4Q8NG98 312 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 STK32AQ8WU08 396 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 BMFQ96LC9 184 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 STK33Q9BYT3 514 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 MUC3BQ9H195 1237 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 KDM4CQ9H3R0 1056 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 PREBQ9HCU5 417 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 ASCL3Q9NQ33 180 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 FAM207AQ9NSI2 230 aaPredicted RBP13.19□□□□□ -0.3
LINC00339-202ENST00000416769 DNAJC28Q9NX36 388 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 GGT7Q9UJ14 662 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 PNMA8BQ9ULN7 279 aaPredicted RBP13.19□□□□□ -0.3
LINC00339-202ENST00000416769 AHCTF1Q8WYP5 2266 aa13.19□□□□□ -0.3
LINC00339-202ENST00000416769 DOCK4Q8N1I0 1966 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 MAST4O15021 2626 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 HECTD1Q9ULT8 2610 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 A0A1W2PQJ5 194 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 K7ESM1 405 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 SPINT1O43278 529 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 PCDH8O95206 1070 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 GKP32189 559 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 USP8P40818 1118 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 OVGP1Q12889 678 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 TRIM14Q14142 442 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 FZD2Q14332 565 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 CDKN3Q16667 212 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 TMEM259Q4ZIN3 620 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 RAB6CQ53S08 254 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 ARSIQ5FYB1 569 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 C3orf38Q5JPI3 329 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 KIAA1614Q5VZ46 1190 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 GUSBP11Q6P575 273 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 DPY19L3Q6ZPD9 716 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 Q6ZSR6 202 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 NYAP1Q6ZVC0 841 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 PTAR1Q7Z6K3 402 aaPredicted RBP13.18□□□□□ -0.3
LINC00339-202ENST00000416769 CACTIN-AS1Q8N1I8 211 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 ATP11CQ8NB49 1132 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 VCPIP1Q96JH7 1222 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 TTYH3Q9C0H2 523 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 RAB6CQ9H0N0 254 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 TCEAL2Q9H3H9 227 aaPredicted RBP13.18□□□□□ -0.3
LINC00339-202ENST00000416769 MYO6Q9UM54 1294 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 HS3ST2Q9Y278 367 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 ITM2BQ9Y287 266 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 TBC1D30Q9Y2I9 924 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 FHOD1Q9Y613 1164 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 WASF2Q9Y6W5 498 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 NAV2Q8IVL1 2488 aa13.18□□□□□ -0.3
LINC00339-202ENST00000416769 M0QYT0 321 aa13.17□□□□□ -0.3
LINC00339-202ENST00000416769 EPHB6O15197 1021 aa13.17□□□□□ -0.3
LINC00339-202ENST00000416769 ALOX15BO15296 676 aa13.17□□□□□ -0.3
LINC00339-202ENST00000416769 KLK10O43240 276 aa13.17□□□□□ -0.3
LINC00339-202ENST00000416769 DAB1O75553 588 aa13.17□□□□□ -0.3
LINC00339-202ENST00000416769 LEFTY1O75610 366 aa13.17□□□□□ -0.3
LINC00339-202ENST00000416769 RHOCP08134 193 aa13.17□□□□□ -0.3
LINC00339-202ENST00000416769 HNRNPA2B1P22626 353 aaKnown RBP13.17□□□□□ -0.3
LINC00339-202ENST00000416769 VASPP50552 380 aaPredicted RBP13.17□□□□□ -0.3
LINC00339-202ENST00000416769 PCBP4P57723 403 aaKnown RBP13.17□□□□□ -0.3
LINC00339-202ENST00000416769 E2F1Q01094 437 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms