RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 SNNO75324 88 aaPredicted RBP15.08■□□□□ 0
USP4-203ENST00000415188 NCAM1P13591 858 aa15.08■□□□□ 0
USP4-203ENST00000415188 CALB2P22676 271 aa15.08■□□□□ 0
USP4-203ENST00000415188 IGFBP6P24592 240 aaPredicted RBP15.08■□□□□ 0
USP4-203ENST00000415188 GP5P40197 560 aa15.08■□□□□ 0
USP4-203ENST00000415188 CLCNKBP51801 687 aa15.08■□□□□ 0
USP4-203ENST00000415188 SESN2P58004 480 aaPredicted RBP15.08■□□□□ 0
USP4-203ENST00000415188 BST1Q10588 318 aa15.08■□□□□ 0
USP4-203ENST00000415188 MAPRE1Q15691 268 aaKnown RBP15.08■□□□□ 0
USP4-203ENST00000415188 CHI3L2Q15782 390 aa15.08■□□□□ 0
USP4-203ENST00000415188 UPP1Q16831 310 aa15.08■□□□□ 0
USP4-203ENST00000415188 RTP2Q5QGT7 225 aa15.08■□□□□ 0
USP4-203ENST00000415188 PM20D1Q6GTS8 502 aa15.08■□□□□ 0
USP4-203ENST00000415188 DCLRE1AQ6PJP8 1040 aa15.08■□□□□ 0
USP4-203ENST00000415188 CCDC149Q6ZUS6 474 aa15.08■□□□□ 0
USP4-203ENST00000415188 PID1Q7Z2X4 250 aa15.08■□□□□ 0
USP4-203ENST00000415188 RASSF3Q86WH2 238 aa15.08■□□□□ 0
USP4-203ENST00000415188 CRLF3Q8IUI8 442 aa15.08■□□□□ 0
USP4-203ENST00000415188 FBXL6Q8N531 539 aa15.08■□□□□ 0
USP4-203ENST00000415188 UTP4Q969X6 686 aaKnown RBP15.08■□□□□ 0
USP4-203ENST00000415188 PTCD3Q96EY7 689 aaKnown RBP15.08■□□□□ 0
USP4-203ENST00000415188 TBC1D10AQ9BXI6 508 aa15.08■□□□□ 0
USP4-203ENST00000415188 GBA3Q9H227 469 aa15.08■□□□□ 0
USP4-203ENST00000415188 CASS4Q9NQ75 786 aa15.08■□□□□ 0
USP4-203ENST00000415188 DDIT4Q9NX09 232 aa15.08■□□□□ 0
USP4-203ENST00000415188 SYBUQ9NX95 663 aa15.08■□□□□ 0
USP4-203ENST00000415188 BFARQ9NZS9 450 aa15.08■□□□□ 0
USP4-203ENST00000415188 COX16Q9P0S2 106 aa15.08■□□□□ 0
USP4-203ENST00000415188 SORCS3Q9UPU3 1222 aa15.08■□□□□ 0
USP4-203ENST00000415188 PTPRDP23468 1912 aa15.07■□□□□ 0
USP4-203ENST00000415188 MYO10Q9HD67 2058 aa15.07■□□□□ 0
USP4-203ENST00000415188 DENND4AQ7Z401 1863 aa15.07■□□□□ 0
USP4-203ENST00000415188 C2orf16Q68DN1 1984 aa15.07■□□□□ 0
USP4-203ENST00000415188 CCDC195A0A1B0GUA6 201 aa15.07■□□□□ 0
USP4-203ENST00000415188 TGM5O43548 720 aa15.07■□□□□ 0
USP4-203ENST00000415188 LMNAP02545 664 aaKnown RBP15.07■□□□□ 0
USP4-203ENST00000415188 NPY2RP49146 381 aa15.07■□□□□ 0
USP4-203ENST00000415188 NHLH1Q02575 133 aa15.07■□□□□ 0
USP4-203ENST00000415188 STX3Q13277 289 aa15.07■□□□□ 0
USP4-203ENST00000415188 FAM171BQ6P995 826 aa15.07■□□□□ 0
USP4-203ENST00000415188 BHLHA9Q7RTU4 235 aa15.07■□□□□ 0
USP4-203ENST00000415188 LONP2Q86WA8 852 aa15.07■□□□□ 0
USP4-203ENST00000415188 CCDC33Q8N5R6 958 aa15.07■□□□□ 0
USP4-203ENST00000415188 PRSS33Q8NF86 280 aa15.07■□□□□ 0
USP4-203ENST00000415188 CERS2Q96G23 380 aa15.07■□□□□ 0
USP4-203ENST00000415188 PPP1R2P1Q96PQ5 205 aa15.07■□□□□ 0
USP4-203ENST00000415188 SLC13A1Q9BZW2 595 aa15.07■□□□□ 0
USP4-203ENST00000415188 OSBPL2Q9H1P3 480 aa15.07■□□□□ 0
USP4-203ENST00000415188 DMAP1Q9NPF5 467 aaPredicted RBP15.07■□□□□ 0
USP4-203ENST00000415188 THAP1Q9NVV9 213 aa15.07■□□□□ 0
USP4-203ENST00000415188 TXNDC16Q9P2K2 825 aa15.07■□□□□ 0
USP4-203ENST00000415188 MCM8Q9UJA3 840 aa15.07■□□□□ 0
USP4-203ENST00000415188 USP1O94782 785 aa15.06■□□□□ 0
USP4-203ENST00000415188 CBX6O95503 412 aa15.06■□□□□ 0
USP4-203ENST00000415188 USP17L7P0C7H9 530 aa15.06■□□□□ 0
USP4-203ENST00000415188 MYL2P10916 166 aa15.06■□□□□ 0
USP4-203ENST00000415188 MAGEA12P43365 314 aa15.06■□□□□ 0
USP4-203ENST00000415188 PRPSAP1Q14558 356 aa15.06■□□□□ 0
USP4-203ENST00000415188 FAM171A1Q5VUB5 890 aa15.06■□□□□ 0
USP4-203ENST00000415188 KCTD11Q693B1 232 aa15.06■□□□□ 0
USP4-203ENST00000415188 GPRIN1Q7Z2K8 1008 aa15.06■□□□□ 0
USP4-203ENST00000415188 KLHDC8BQ8IXV7 354 aa15.06■□□□□ 0
USP4-203ENST00000415188 PLCD3Q8N3E9 789 aa15.06■□□□□ 0
USP4-203ENST00000415188 MYLPFQ96A32 169 aa15.06■□□□□ 0
USP4-203ENST00000415188 ZNF707Q96C28 371 aaPredicted RBP15.06■□□□□ 0
USP4-203ENST00000415188 TSGA13Q96PP4 275 aa15.06■□□□□ 0
USP4-203ENST00000415188 KCNH6Q9H252 994 aa15.06■□□□□ 0
USP4-203ENST00000415188 MMADHCQ9H3L0 296 aaPredicted RBP15.06■□□□□ 0
USP4-203ENST00000415188 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.06■□□□□ 0
USP4-203ENST00000415188 ZFATQ9P243 1243 aa15.06■□□□□ 0
USP4-203ENST00000415188 FNIP2Q9P278 1114 aa15.06■□□□□ 0
USP4-203ENST00000415188 FAM237BA0A1B0GVD1 139 aa15.05■□□□□ -0
USP4-203ENST00000415188 M0QZQ0 153 aa15.05■□□□□ -0
USP4-203ENST00000415188 FCHO1O14526 889 aa15.05■□□□□ -0
USP4-203ENST00000415188 ITGA2BP08514 1039 aa15.05■□□□□ -0
USP4-203ENST00000415188 TYMPP19971 482 aa15.05■□□□□ -0
USP4-203ENST00000415188 GRK2P25098 689 aa15.05■□□□□ -0
USP4-203ENST00000415188 SERPINB3P29508 390 aa15.05■□□□□ -0
USP4-203ENST00000415188 SPRP35270 261 aaPredicted RBP15.05■□□□□ -0
USP4-203ENST00000415188 HADHAP40939 763 aa15.05■□□□□ -0
USP4-203ENST00000415188 CCNG1P51959 295 aa15.05■□□□□ -0
USP4-203ENST00000415188 CSE1LP55060 971 aaKnown RBP15.05■□□□□ -0
USP4-203ENST00000415188 BRMS1LQ5PSV4 323 aa15.05■□□□□ -0
USP4-203ENST00000415188 ARMC3Q5W041 872 aa15.05■□□□□ -0
USP4-203ENST00000415188 LILRA6Q6PI73 481 aa15.05■□□□□ -0
USP4-203ENST00000415188 OTOP3Q7RTS5 596 aa15.05■□□□□ -0
USP4-203ENST00000415188 ALYREFQ86V81 257 aaKnown RBP15.05■□□□□ -0
USP4-203ENST00000415188 UBALD2Q8IYN6 164 aa15.05■□□□□ -0
USP4-203ENST00000415188 ARHGAP24Q8N264 748 aa15.05■□□□□ -0
USP4-203ENST00000415188 SERBP1Q8NC51 408 aaKnown RBP eCLIP15.05■□□□□ -0
USP4-203ENST00000415188 C3orf58Q8NDZ4 430 aa15.05■□□□□ -0
USP4-203ENST00000415188 FAM13CQ8NE31 585 aa15.05■□□□□ -0
USP4-203ENST00000415188 SMG7Q92540 1137 aaKnown RBP15.05■□□□□ -0
USP4-203ENST00000415188 TBC1D31Q96DN5 1066 aa15.05■□□□□ -0
USP4-203ENST00000415188 TRIM56Q9BRZ2 755 aaKnown RBP15.05■□□□□ -0
USP4-203ENST00000415188 BTBD10Q9BSF8 475 aa15.05■□□□□ -0
USP4-203ENST00000415188 TTPALQ9BTX7 342 aa15.05■□□□□ -0
USP4-203ENST00000415188 WDCPQ9H6R7 721 aa15.05■□□□□ -0
USP4-203ENST00000415188 TMPRSS4Q9NRS4 437 aa15.05■□□□□ -0
USP4-203ENST00000415188 NSMCE4AQ9NXX6 385 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms