RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 CCDC121Q6ZUS5 278 aa19.23■□□□□ 0.67
USP39-202ENST00000409025 KDELC2Q7Z4H8 507 aa19.23■□□□□ 0.67
USP39-202ENST00000409025 STRA8Q7Z7C7 330 aa19.23■□□□□ 0.67
USP39-202ENST00000409025 TMEM150AQ86TG1 271 aa19.23■□□□□ 0.67
USP39-202ENST00000409025 HERC6Q8IVU3 1022 aa19.23■□□□□ 0.67
USP39-202ENST00000409025 SPOCK2Q92563 424 aa19.23■□□□□ 0.67
USP39-202ENST00000409025 PRICKLE1Q96MT3 831 aaPredicted RBP19.23■□□□□ 0.67
USP39-202ENST00000409025 RBBP8Q99708 897 aa19.23■□□□□ 0.67
USP39-202ENST00000409025 TRPC7Q9HCX4 862 aa19.23■□□□□ 0.67
USP39-202ENST00000409025 ZNF334Q9HCZ1 680 aaPredicted RBP19.23■□□□□ 0.67
USP39-202ENST00000409025 PRKAG2Q9UGJ0 569 aa19.23■□□□□ 0.67
USP39-202ENST00000409025 PHTF1Q9UMS5 762 aa19.23■□□□□ 0.67
USP39-202ENST00000409025 STARD13Q9Y3M8 1113 aa19.23■□□□□ 0.67
USP39-202ENST00000409025 ASB3Q9Y575 518 aa19.23■□□□□ 0.67
USP39-202ENST00000409025 CNPP09543 421 aaKnown RBP19.23■□□□□ 0.67
USP39-202ENST00000409025 SPATA31D3P0C874 917 aa19.23■□□□□ 0.67
USP39-202ENST00000409025 ZNF235Q14590 738 aa19.23■□□□□ 0.67
USP39-202ENST00000409025 ARMC3Q5W041 872 aa19.23■□□□□ 0.67
USP39-202ENST00000409025 SPATA31D4Q6ZUB0 917 aa19.23■□□□□ 0.67
USP39-202ENST00000409025 CHST9Q7L1S5 443 aa19.23■□□□□ 0.67
USP39-202ENST00000409025 AGAP2Q99490 1192 aa19.23■□□□□ 0.67
USP39-202ENST00000409025 ATXN3LQ9H3M9 355 aa19.23■□□□□ 0.67
USP39-202ENST00000409025 MANSC1Q9H8J5 431 aa19.23■□□□□ 0.67
USP39-202ENST00000409025 ARNT2Q9HBZ2 717 aa19.23■□□□□ 0.67
USP39-202ENST00000409025 HAUS2Q9NVX0 235 aa19.23■□□□□ 0.67
USP39-202ENST00000409025 NSMCE4AQ9NXX6 385 aa19.23■□□□□ 0.67
USP39-202ENST00000409025 TCAF1Q9Y4C2 921 aa19.23■□□□□ 0.67
USP39-202ENST00000409025 INSL6Q9Y581 213 aa19.23■□□□□ 0.67
USP39-202ENST00000409025 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP19.22■□□□□ 0.67
USP39-202ENST00000409025 H3BNC9 293 aa19.22■□□□□ 0.67
USP39-202ENST00000409025 TPP1O14773 563 aa19.22■□□□□ 0.67
USP39-202ENST00000409025 TGM5O43548 720 aa19.22■□□□□ 0.67
USP39-202ENST00000409025 EDF1O60869 148 aaKnown RBP19.22■□□□□ 0.67
USP39-202ENST00000409025 NEFHP12036 1026 aa19.22■□□□□ 0.67
USP39-202ENST00000409025 ZNF177Q13360 481 aaPredicted RBP19.22■□□□□ 0.67
USP39-202ENST00000409025 IL31Q6EBC2 164 aa19.22■□□□□ 0.67
USP39-202ENST00000409025 CGB2Q6NT52 195 aa19.22■□□□□ 0.67
USP39-202ENST00000409025 BBS5Q8N3I7 341 aa19.22■□□□□ 0.67
USP39-202ENST00000409025 PGBD5Q8N414 524 aa19.22■□□□□ 0.67
USP39-202ENST00000409025 ZNF778Q96MU6 729 aa19.22■□□□□ 0.67
USP39-202ENST00000409025 PLCD4Q9BRC7 762 aa19.22■□□□□ 0.67
USP39-202ENST00000409025 POLR1EQ9GZS1 481 aaKnown RBP19.22■□□□□ 0.67
USP39-202ENST00000409025 PDFQ9HBH1 243 aa19.22■□□□□ 0.67
USP39-202ENST00000409025 IARS2Q9NSE4 1012 aaKnown RBP19.22■□□□□ 0.67
USP39-202ENST00000409025 KIAA0100Q14667 2235 aaKnown RBP19.22■□□□□ 0.67
USP39-202ENST00000409025 MIA3Q5JRA6 1907 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 A0A0D9SEW6 157 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 A0A1B0GVM2 712 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 CCDC78A2IDD5 438 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 TCAF2A6NFQ2 919 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 ANKRD65E5RJM6 399 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 CXCL14O95715 111 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 ALDOAP04075 364 aaKnown RBP19.21■□□□□ 0.67
USP39-202ENST00000409025 MMP2P08253 660 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 SERPINB4P48594 390 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 CSE1LP55060 971 aaKnown RBP19.21■□□□□ 0.67
USP39-202ENST00000409025 FPGSQ05932 587 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 SLC25A41Q8N5S1 370 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 KLHL23Q8NBE8 558 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 OR7D4Q8NG98 312 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 ARRDC2Q8TBH0 407 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 ATP2A3Q93084 1043 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 PRKD2Q9BZL6 878 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 ATP13A1Q9HD20 1204 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 ALG13Q9NP73 1137 aaKnown RBP19.21■□□□□ 0.67
USP39-202ENST00000409025 SLCO1B3Q9NPD5 702 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 SMPD4Q9NXE4 827 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 PRKAG3Q9UGI9 489 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 ARL2BPQ9Y2Y0 163 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 ILVBLA1L0T0 632 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 CCT8L1PA6NM43 557 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 TSPAN3O60637 253 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 LATS1O95835 1130 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 RHOCP08134 193 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 LINC00271P0C7V0 271 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 PAMP19021 973 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 CHRNA4P43681 627 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 LIMK2P53671 638 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 CORO7P57737 925 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 SMAD3P84022 425 aaKnown RBP19.21■□□□□ 0.67
USP39-202ENST00000409025 SETD3Q86TU7 594 aaPredicted RBP19.21■□□□□ 0.67
USP39-202ENST00000409025 CLP1Q92989 425 aaKnown RBP19.21■□□□□ 0.67
USP39-202ENST00000409025 WBP2Q969T9 261 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 TADA1Q96BN2 335 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 CYP2S1Q96SQ9 504 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 SPON2Q9BUD6 331 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 IL21Q9HBE4 155 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 STOML2Q9UJZ1 356 aa19.21■□□□□ 0.67
USP39-202ENST00000409025 PLXNA4Q9HCM2 1894 aa19.2■□□□□ 0.66
USP39-202ENST00000409025 CHD5Q8TDI0 1954 aa19.2■□□□□ 0.66
USP39-202ENST00000409025 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.2■□□□□ 0.66
USP39-202ENST00000409025 KDELR3O43731 214 aa19.2■□□□□ 0.66
USP39-202ENST00000409025 LRG1P02750 347 aa19.2■□□□□ 0.66
USP39-202ENST00000409025 HOXD9P28356 352 aaPredicted RBP19.2■□□□□ 0.66
USP39-202ENST00000409025 TYK2P29597 1187 aa19.2■□□□□ 0.66
USP39-202ENST00000409025 SERPINH1P50454 418 aaKnown RBP19.2■□□□□ 0.66
USP39-202ENST00000409025 SGSHP51688 502 aa19.2■□□□□ 0.66
USP39-202ENST00000409025 OXCT1P55809 520 aa19.2■□□□□ 0.66
USP39-202ENST00000409025 SEPT6Q14141 434 aa19.2■□□□□ 0.66
USP39-202ENST00000409025 CCDC149Q6ZUS6 474 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms