RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 SPATS2LQ9NUQ6 558 aaKnown RBP4.29□□□□□ -1.72
HMGB1-204ENST00000399489 ANO10Q9NW15 660 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 CHCHD3Q9NX63 227 aaKnown RBP4.29□□□□□ -1.72
HMGB1-204ENST00000399489 HOXC10Q9NYD6 342 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 HCN3Q9P1Z3 774 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 IL19Q9UHD0 177 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 TUBE1Q9UJT0 475 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 ANAPC2Q9UJX6 822 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 CPSF3Q9UKF6 684 aaKnown RBP4.29□□□□□ -1.72
HMGB1-204ENST00000399489 NFU1Q9UMS0 254 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 RCE1Q9Y256 329 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 BTBD3Q9Y2F9 522 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 PTRH2Q9Y3E5 179 aaKnown RBP4.29□□□□□ -1.72
HMGB1-204ENST00000399489 NEU2Q9Y3R4 380 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 COL15A1P39059 1388 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 A0A0B4J203 849 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 RNF103-CHMP3A0A140T963 221 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 KCNJ18B7U540 433 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 GCOM1H8Y6P7 765 aaPredicted RBP4.28□□□□□ -1.72
HMGB1-204ENST00000399489 AP3B1O00203 1094 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 RNF103O00237 685 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 SYN3O14994 580 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 RIPK2O43353 540 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 CCNT2O60583 730 aaKnown RBP4.28□□□□□ -1.72
HMGB1-204ENST00000399489 HEXIM1O94992 359 aaKnown RBP4.28□□□□□ -1.72
HMGB1-204ENST00000399489 HMOX1P09601 288 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 FERP16591 822 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 KCNA5P22460 613 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 TTKP33981 857 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 CRHR1P34998 444 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 ACAA2P42765 397 aaKnown RBP4.28□□□□□ -1.72
HMGB1-204ENST00000399489 CD151P48509 253 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 LIG4P49917 911 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 SH3BGRP55822 239 aaPredicted RBP4.28□□□□□ -1.72
HMGB1-204ENST00000399489 EIF3BP55884 814 aaKnown RBP4.28□□□□□ -1.72
HMGB1-204ENST00000399489 YPEL5P62699 121 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 ZBTB16Q05516 673 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 RCN2Q14257 317 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 KCNJ12Q14500 433 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 INSCQ1MX18 579 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 CEP55Q53EZ4 464 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 PLA1AQ53H76 456 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 TAF3Q5VWG9 929 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 FIP1L1Q6UN15 594 aaKnown RBP4.28□□□□□ -1.72
HMGB1-204ENST00000399489 OLFML1Q6UWY5 402 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 OLFM4Q6UX06 510 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 Q6YL49 198 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 LINC00696Q6ZRV3 163 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 GPRIN1Q7Z2K8 1008 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 TRABD2AQ86V40 505 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 GAS2L3Q86XJ1 694 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 PDSS2Q86YH6 399 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 SYCP3Q8IZU3 236 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 MRPL43Q8N983 215 aaKnown RBP4.28□□□□□ -1.72
HMGB1-204ENST00000399489 DENND6BQ8NEG7 585 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 REPS2Q8NFH8 660 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 RFWD2Q8NHY2 731 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 KCNE4Q8WWG9 221 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 SLC9A6Q92581 669 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 SPATA5L1Q9BVQ7 753 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 SH2D4AQ9H788 454 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 IL1RAPL2Q9NP60 686 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 MBNL1Q9NR56 388 aaKnown RBP4.28□□□□□ -1.72
HMGB1-204ENST00000399489 ADARB2Q9NS39 739 aaKnown RBP4.28□□□□□ -1.72
HMGB1-204ENST00000399489 DNMT3BQ9UBC3 853 aaKnown RBP4.28□□□□□ -1.72
HMGB1-204ENST00000399489 BAG5Q9UL15 447 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 PADI1Q9ULC6 663 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 ADAM18Q9Y3Q7 739 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 DCAF1Q9Y4B6 1507 aa4.28□□□□□ -1.72
HMGB1-204ENST00000399489 TRBC2A0A5B9 178 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 ARHGEF37A1IGU5 675 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 SH2D7A6NKC9 451 aaPredicted RBP4.27□□□□□ -1.73
HMGB1-204ENST00000399489 BTBD18B2RXH4 712 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 M0QYG6 137 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 ZNF263O14978 683 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 LDLRAD4O15165 306 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 ZSCAN9O15535 394 aaPredicted RBP4.27□□□□□ -1.73
HMGB1-204ENST00000399489 KIF1CO43896 1103 aaKnown RBP4.27□□□□□ -1.73
HMGB1-204ENST00000399489 LPXNO60711 386 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 RTN2O75298 545 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 ABCB1P08183 1280 aaPredicted RBP4.27□□□□□ -1.73
HMGB1-204ENST00000399489 PDHA1P08559 390 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 DDX6P26196 483 aaKnown RBP eCLIP4.27□□□□□ -1.73
HMGB1-204ENST00000399489 AVPR2P30518 371 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 SLC6A4P31645 630 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 IL15P40933 162 aaPredicted RBP4.27□□□□□ -1.73
HMGB1-204ENST00000399489 PNPLA4P41247 253 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 CASP3P42574 277 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 PSMC4P43686 418 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 CCR10P46092 362 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 RABIFP47224 123 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 TRPC1P48995 793 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 HNMTP50135 292 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 LUMP51884 338 aaPredicted RBP4.27□□□□□ -1.73
HMGB1-204ENST00000399489 ZNF135P52742 658 aaPredicted RBP4.27□□□□□ -1.73
HMGB1-204ENST00000399489 CDH15P55291 814 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 OLR1P78380 273 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 TUBB2AQ13885 445 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 HYAL4Q2M3T9 481 aa4.27□□□□□ -1.73
HMGB1-204ENST00000399489 ZNF750Q32MQ0 723 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms