RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 CCDC188H7C350 402 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 TRIM24O15164 1050 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 PLRG1O43660 514 aaKnown RBP7.13□□□□□ -1.27
LIMA1-202ENST00000394943 CTSLP07711 333 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 TMEM92Q6UXU6 159 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 TRIM69Q86WT6 500 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 OR7D4Q8NG98 312 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 RUBCNQ92622 972 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 SLC25A51Q9H1U9 297 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 GBA3Q9H227 469 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 LMAN1LQ9HAT1 526 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 LZTFL1Q9NQ48 299 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 VPS45Q9NRW7 570 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 SEPT3Q9UH03 358 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 IPO11Q9UI26 975 aaKnown RBP7.13□□□□□ -1.27
LIMA1-202ENST00000394943 LRRD1A4D1F6 860 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 FAM170BA6NMN3 283 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 J3KR12 359 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 MUSKO15146 869 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 CST8O60676 142 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 TMCC1O94876 653 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 AVPR2P30518 371 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 SEMA5AQ13591 1074 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 MAP7D1Q3KQU3 841 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 ARHGAP36Q6ZRI8 547 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 TP53INP2Q8IXH6 220 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 EIF1ADQ8N9N8 165 aaKnown RBP7.13□□□□□ -1.27
LIMA1-202ENST00000394943 CADM4Q8NFZ8 388 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 OR2AP1Q8NGE2 309 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 FAM174AQ8TBP5 190 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 TFB1MQ8WVM0 346 aaKnown RBP7.13□□□□□ -1.27
LIMA1-202ENST00000394943 RANBP9Q96S59 729 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 SRPK1Q96SB4 655 aaKnown RBP7.13□□□□□ -1.27
LIMA1-202ENST00000394943 UBA2Q9UBT2 640 aaPredicted RBP7.13□□□□□ -1.27
LIMA1-202ENST00000394943 DNPEPQ9ULA0 475 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 CA14Q9ULX7 337 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 PCDHGA2Q9Y5H1 932 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 MRFAP1Q9Y605 127 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 ERI2A8K979 691 aaKnown RBP7.12□□□□□ -1.27
LIMA1-202ENST00000394943 SGK1O00141 431 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 PSMD11O00231 422 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 TP73O15350 636 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 OPHN1O60890 802 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 PHF2O75151 1096 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 C5AR1P21730 350 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 GLDCP23378 1020 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 OXTRP30559 389 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 DRD3P35462 400 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 P2RY2P41231 377 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 CCR5P51681 352 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 DRG2P55039 364 aaKnown RBP7.12□□□□□ -1.27
LIMA1-202ENST00000394943 ZBTB17Q13105 803 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 MYLK3Q32MK0 819 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 PKN3Q6P5Z2 889 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 PEX13Q92968 403 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 LOXL4Q96JB6 756 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 SIK2Q9H0K1 926 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 IRF2BPLQ9H1B7 796 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 EPC1Q9H2F5 836 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 FARP1Q9Y4F1 1045 aaPredicted RBP7.12□□□□□ -1.27
LIMA1-202ENST00000394943 BRWD1Q9NSI6 2320 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 COL27A1Q8IZC6 1860 aaPredicted RBP7.12□□□□□ -1.27
LIMA1-202ENST00000394943 TCRBV7S2A1N4TA0A589 114 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 RGSL1A5PLK6 1076 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 SMAPO00193 183 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 AREL1O15033 823 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 LATO43561 262 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 PI15O43692 258 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 CREB3O43889 395 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 RNF40O75150 1001 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 POP4O95707 220 aaKnown RBP7.12□□□□□ -1.27
LIMA1-202ENST00000394943 PRLP01236 227 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 GABRG2P18507 467 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 IVDP26440 423 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 MTAPQ13126 283 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 WHAMMP3Q1A5X7 153 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 ZNF569Q5MCW4 686 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 SEL1L2Q5TEA6 688 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 EP400NLQ6ZTU2 488 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 SRLQ86TD4 932 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 PRPF39Q86UA1 669 aaKnown RBP7.12□□□□□ -1.27
LIMA1-202ENST00000394943 ZNF513Q8N8E2 541 aaPredicted RBP7.12□□□□□ -1.27
LIMA1-202ENST00000394943 SPATA13Q96N96 652 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 HAUS2Q9NVX0 235 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 R3HDM2Q9Y2K5 976 aaKnown RBP7.12□□□□□ -1.27
LIMA1-202ENST00000394943 CTAGE9A4FU28 777 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 PGRMC1O00264 195 aaKnown RBP7.12□□□□□ -1.27
LIMA1-202ENST00000394943 PSMD3O43242 534 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 SMAD6O43541 496 aaKnown RBP7.12□□□□□ -1.27
LIMA1-202ENST00000394943 SRGAP2O75044 1071 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 APBB3O95704 486 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 GM2AP17900 193 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 TPSB2P20231 275 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 CHRNA3P32297 505 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 CETN2P41208 172 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 OTUD4Q01804 1114 aaKnown RBP7.12□□□□□ -1.27
LIMA1-202ENST00000394943 ACVR1Q04771 509 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 PTK6Q13882 451 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 TPSAB1Q15661 275 aa7.12□□□□□ -1.27
LIMA1-202ENST00000394943 PIP5KL1Q5T9C9 394 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms