RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 MCF2LO15068 1137 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 ZNF623O75123 536 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 TNNC2P02585 160 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 KCNE1P15382 129 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 CSF2RAP15509 400 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 GRK2P25098 689 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 DYNLT1P63172 113 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 KLF10Q13118 480 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 FLOT2Q14254 428 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 ZNF699Q32M78 642 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 ANKDD1AQ495B1 522 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 ZNF394Q53GI3 561 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 METTL21CQ5VZV1 264 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 DCLRE1AQ6PJP8 1040 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.31□□□□□ -0.61e-8■■■■□ 26.3
CUX1-204ENST00000393824 FAM71DQ8N9W8 422 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 CMASQ8NFW8 434 aaPredicted RBP11.31□□□□□ -0.6
CUX1-204ENST00000393824 LRRC39Q96DD0 335 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 ZNF597Q96LX8 424 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 TWNKQ96RR1 684 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 SORT1Q99523 831 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 PKP2Q99959 881 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 PLAC1Q9HBJ0 212 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 SMYD2Q9NRG4 433 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 EPS15L1Q9UBC2 864 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 MYRFQ9Y2G1 1151 aa11.31□□□□□ -0.6
CUX1-204ENST00000393824 FAM32AQ9Y421 112 aaKnown RBP11.31□□□□□ -0.6
CUX1-204ENST00000393824 CASTOR2A6NHX0 329 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 TRIM64CA6NLI5 447 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 TNRC18O15417 2968 aaPredicted RBP11.3□□□□□ -0.6
CUX1-204ENST00000393824 BAIAP3O94812 1187 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 SERPINE1P05121 402 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 ITGB1P05556 798 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 SERPINB9P50453 376 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 EIF3EP60228 445 aaKnown RBP11.3□□□□□ -0.6
CUX1-204ENST00000393824 KCNC4Q03721 635 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 TRPC3Q13507 836 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 PEX6Q13608 980 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 BMPR2Q13873 1038 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 CYTH1Q15438 398 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 SURF1Q15526 300 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 PAN2Q504Q3 1202 aaKnown RBP11.3□□□□□ -0.6
CUX1-204ENST00000393824 PIGGQ5H8A4 983 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 C9orf57Q5W0N0 161 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 C16orf89Q6UX73 402 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 GPR180Q86V85 440 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 CARM1Q86X55 608 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 CRIPAKQ8N1N5 446 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 GALNT4Q8N4A0 578 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 ADAMTS16Q8TE57 1224 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 CFAP36Q96G28 342 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 OSBPL11Q9BXB4 747 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 POPDC2Q9HBU9 364 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 OLAHQ9NV23 265 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 ZC3H7BQ9UGR2 993 aaKnown RBP11.3□□□□□ -0.6
CUX1-204ENST00000393824 REV3LO60673 3130 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 DCXO43602 365 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 AVILO75366 819 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 APOEP02649 317 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 OCM2P0CE71 109 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 OCMP0CE72 109 aaPredicted RBP11.3□□□□□ -0.6
CUX1-204ENST00000393824 ACRP10323 421 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 NCF2P19878 526 aaPredicted RBP11.3□□□□□ -0.6
CUX1-204ENST00000393824 PSMA2P25787 234 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 NUMBP49757 651 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 CLCNKBP51801 687 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 NDST2P52849 883 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 YWHAZP63104 245 aaKnown RBP11.3□□□□□ -0.6
CUX1-204ENST00000393824 KYAT1Q16773 422 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 ITPRIPL1Q6GPH6 555 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 SLC24A5Q71RS6 500 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 ZNF280BQ86YH2 543 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 HPDLQ96IR7 371 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 ZNF512Q96ME7 567 aaPredicted RBP11.3□□□□□ -0.6
CUX1-204ENST00000393824 LHX5Q9H2C1 402 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 RSAD1Q9HA92 442 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 PNPLA3Q9NST1 481 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 PNPOQ9NVS9 261 aa11.3□□□□□ -0.6
CUX1-204ENST00000393824 C7orf72A4D263 438 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 FAM159BA6NKW6 160 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 ZBTB14O43829 449 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 UGT1A9O60656 530 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 LRCH4O75427 683 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 ZMPSTE24O75844 475 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 CXCL10P02778 98 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 INHBBP09529 407 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 CSH1P0DML2 217 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 CSH2P0DML3 217 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 CCDC130P13994 396 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 CNTFP26441 200 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 MAGEA6P43360 314 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 HARS2P49590 506 aaKnown RBP11.29□□□□□ -0.6
CUX1-204ENST00000393824 NEK2P51955 445 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 FAM189BP81408 668 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 DPYSQ14117 519 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 ZBED5Q49AG3 693 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 COL13A1Q5TAT6 717 aaPredicted RBP11.29□□□□□ -0.6
CUX1-204ENST00000393824 C4orf22Q6V702 233 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 ATG14Q6ZNE5 492 aa11.29□□□□□ -0.6
CUX1-204ENST00000393824 SCAIQ8N9R8 606 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms