RNA–Protein interactions for RNA: ENST00000377499.9

LMO7-204, Transcript of LIM domain 7, human

TSL 2

Gene LMO7, Length 3,472 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMO7-204	ENST00000377499	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	11.88	□□□□□ -0.51
LMO7-204	ENST00000377499	DOLK	Q9UPQ8	538 aa		11.88	□□□□□ -0.51
LMO7-204	ENST00000377499	FARP1	Q9Y4F1	1045 aa	Predicted RBP	11.88	□□□□□ -0.51
LMO7-204	ENST00000377499	C2orf78	A6NCI8	922 aa		11.88	□□□□□ -0.51
LMO7-204	ENST00000377499	ZNF840P	A6NDX5	716 aa		11.88	□□□□□ -0.51
LMO7-204	ENST00000377499	ALOX15B	O15296	676 aa		11.88	□□□□□ -0.51
LMO7-204	ENST00000377499	PMPCB	O75439	489 aa		11.88	□□□□□ -0.51
LMO7-204	ENST00000377499	C8A	P07357	584 aa		11.88	□□□□□ -0.51
LMO7-204	ENST00000377499	GSTT2	P0CG29	244 aa		11.88	□□□□□ -0.51
LMO7-204	ENST00000377499	GSTT2B	P0CG30	244 aa		11.88	□□□□□ -0.51
LMO7-204	ENST00000377499	CCNB1	P14635	433 aa		11.88	□□□□□ -0.51
LMO7-204	ENST00000377499	ERF	P50548	548 aa		11.88	□□□□□ -0.51
LMO7-204	ENST00000377499	KPNA1	P52294	538 aa	Predicted RBP	11.88	□□□□□ -0.51
LMO7-204	ENST00000377499	SMAD3	P84022	425 aa	Known RBP	11.88	□□□□□ -0.51
LMO7-204	ENST00000377499	OLIG2	Q13516	323 aa		11.88	□□□□□ -0.51
LMO7-204	ENST00000377499	TMEM240	Q5SV17	173 aa		11.88	□□□□□ -0.51
LMO7-204	ENST00000377499	ZNF697	Q5TEC3	545 aa		11.88	□□□□□ -0.51
LMO7-204	ENST00000377499	TXNDC8	Q6A555	127 aa		11.88	□□□□□ -0.51
LMO7-204	ENST00000377499	SLC7A5P1	Q8MH63	180 aa		11.88	□□□□□ -0.51
LMO7-204	ENST00000377499	PPM1N	Q8N819	430 aa		11.88	□□□□□ -0.51
LMO7-204	ENST00000377499	ARL14EP	Q8N8R7	260 aa	Predicted RBP	11.88	□□□□□ -0.51
LMO7-204	ENST00000377499	IPMK	Q8NFU5	416 aa		11.88	□□□□□ -0.51
LMO7-204	ENST00000377499	DNAJC9	Q8WXX5	260 aa		11.88	□□□□□ -0.51
LMO7-204	ENST00000377499	CDK5RAP1	Q96SZ6	601 aa	Known RBP	11.88	□□□□□ -0.51
LMO7-204	ENST00000377499	EMILIN2	Q9BXX0	1053 aa		11.88	□□□□□ -0.51
LMO7-204	ENST00000377499	EPB41L4B	Q9H329	900 aa		11.88	□□□□□ -0.51
LMO7-204	ENST00000377499	IPO11	Q9UI26	975 aa	Known RBP	11.88	□□□□□ -0.51
LMO7-204	ENST00000377499	CCL16	O15467	120 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	MTSS1	O43312	755 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	COCH	O43405	550 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	PTPN3	P26045	913 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	CORO1A	P31146	461 aa	Known RBP	11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	CYP4F8	P98187	520 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	RAB33A	Q14088	237 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	ALF	Q53S48	1182 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	SPDYC	Q5MJ68	293 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	BNIPL	Q7Z465	357 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	MAEL	Q96JY0	434 aa	Known RBP	11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	SLC39A3	Q9BRY0	314 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	DDX18	Q9NVP1	670 aa	Known RBP	11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	11.87	□□□□□ -0.51	4e-6	■□□□□ 9.6
LMO7-204	ENST00000377499	SSX2IP	Q9Y2D8	614 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	GRXCR1	A8MXD5	290 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	RASA4B	C9J798	803 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	RASA4	O43374	803 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	TGM5	O43548	720 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	RAMP2	O60895	175 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	INHBA	P08476	426 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	ADAR	P55265	1226 aa	Known RBP	11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	SEMA3B	Q13214	749 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	POLD3	Q15054	466 aa	Predicted RBP	11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	PARP6	Q2NL67	630 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	ZNF362	Q5T0B9	420 aa	Predicted RBP	11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	OTOP3	Q7RTS5	596 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	LZTR1	Q8N653	840 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	POF1B	Q8WVV4	589 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	OLFM3	Q96PB7	478 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	KLHL5	Q96PQ7	755 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	UXT	Q9UBK9	157 aa	Predicted RBP	11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	MICAL3	Q7RTP6	2002 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	IGLV3-25	P01717	112 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	MYOG	P15173	224 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	TPH1	P17752	444 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	TACR2	P21452	398 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	PPP2R2A	P63151	447 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	TBL3	Q12788	808 aa	Known RBP	11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	KCNJ11	Q14654	390 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	CNPY1	Q3B7I2	92 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	MSANTD2	Q6P1R3	559 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	CES3	Q6UWW8	571 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	PACS1	Q6VY07	963 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	RTL3	Q8N8U3	475 aa	Known RBP	11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	KREMEN2	Q8NCW0	462 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	IGSF8	Q969P0	613 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	HTATIP2	Q9BUP3	242 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	FSD1L	Q9BXM9	530 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	ROPN1B	Q9BZX4	212 aa	Predicted RBP	11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	ROPN1	Q9HAT0	212 aa	Predicted RBP	11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	NT5M	Q9NPB1	228 aa		11.87	□□□□□ -0.51
LMO7-204	ENST00000377499	VWA8	A3KMH1	1905 aa		11.86	□□□□□ -0.51
LMO7-204	ENST00000377499	CDH16	O75309	829 aa		11.86	□□□□□ -0.51
LMO7-204	ENST00000377499	GLUD1	P00367	558 aa		11.86	□□□□□ -0.51
LMO7-204	ENST00000377499	MGAT1	P26572	445 aa		11.86	□□□□□ -0.51
LMO7-204	ENST00000377499	MAX	P61244	160 aa		11.86	□□□□□ -0.51
LMO7-204	ENST00000377499	WASHC5	Q12768	1159 aa		11.86	□□□□□ -0.51
LMO7-204	ENST00000377499	ZBTB17	Q13105	803 aa		11.86	□□□□□ -0.51
LMO7-204	ENST00000377499	EFTUD2	Q15029	972 aa	Known RBP eCLIP	11.86	□□□□□ -0.51	2e-6	■■■□□ 17.4
LMO7-204	ENST00000377499	PPM1L	Q5SGD2	360 aa		11.86	□□□□□ -0.51
LMO7-204	ENST00000377499	AGBL2	Q5U5Z8	902 aa		11.86	□□□□□ -0.51
LMO7-204	ENST00000377499	OR52K1	Q8NGK4	314 aa		11.86	□□□□□ -0.51
LMO7-204	ENST00000377499	TRIM56	Q9BRZ2	755 aa	Known RBP	11.86	□□□□□ -0.51
LMO7-204	ENST00000377499	C17orf80	Q9BSJ5	609 aa		11.86	□□□□□ -0.51
LMO7-204	ENST00000377499	TXNDC16	Q9P2K2	825 aa		11.86	□□□□□ -0.51
LMO7-204	ENST00000377499	MOSPD1	Q9UJG1	213 aa		11.86	□□□□□ -0.51
LMO7-204	ENST00000377499	TYW5	A2RUC4	315 aa	Known RBP	11.86	□□□□□ -0.51
LMO7-204	ENST00000377499	ABLIM3	O94929	683 aa		11.86	□□□□□ -0.51
LMO7-204	ENST00000377499	RPS24	P62847	133 aa	Known RBP	11.86	□□□□□ -0.51
LMO7-204	ENST00000377499	PPID	Q08752	370 aa	Known RBP	11.86	□□□□□ -0.51
LMO7-204	ENST00000377499	MAP7	Q14244	749 aa		11.86	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms