RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 C7P10643 843 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 KRT10P13645 584 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 C5AR1P21730 350 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 CD6P30203 668 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 OXTRP30559 389 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 METAP1P53582 386 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 SNRPD1P62314 119 aaKnown RBP16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 RPL6Q02878 288 aaKnown RBP16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 GALNT2Q10471 571 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 CYTH1Q15438 398 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 ELF2Q15723 593 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 FAM46CQ5VWP2 391 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 SLC36A4Q6YBV0 504 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 AADATQ8N5Z0 425 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 SUMF1Q8NBK3 374 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 OR2AP1Q8NGE2 309 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 TOE1Q96GM8 510 aaKnown RBP16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 EXOC2Q96KP1 924 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 GDAP1L1Q96MZ0 367 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 ZNF599Q96NL3 588 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 OMDQ99983 421 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 HEPHQ9BQS7 1158 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 CINPQ9BW66 212 aaPredicted RBP16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 DUSP15Q9H1R2 295 aaPredicted RBP16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 FBXL12Q9NXK8 326 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 LHX3Q9UBR4 397 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 SERGEFQ9UGK8 458 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 PPM1HQ9ULR3 514 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 PACSIN2Q9UNF0 486 aaPredicted RBP16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 NCKAP1Q9Y2A7 1128 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 HEY1Q9Y5J3 304 aa16.16■□□□□ 0.18
CCDC28A-201ENST00000332797 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 A0A1W2PP55 124 aa16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 PLK4O00444 970 aa16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 KPNA3O00505 521 aaPredicted RBP16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 KRIT1O00522 736 aa16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 MAFKO60675 156 aa16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 NDUFS2O75306 463 aa16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 LEFTY1O75610 366 aa16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 IGLV3-19P01714 112 aa16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 PRNPP04156 253 aa16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 ZFXP17010 805 aaPredicted RBP16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 GARSP41250 739 aaKnown RBP16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 RWDD2BP57060 319 aa16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 SFSWAPQ12872 951 aaKnown RBP16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 SLC10A2Q12908 348 aaPredicted RBP16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 TFDP2Q14188 446 aa16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 RFTN1Q14699 578 aaPredicted RBP16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 TAZQ16635 292 aa16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 ARSIQ5FYB1 569 aa16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 TFDP3Q5H9I0 405 aa16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 TMCO4Q5TGY1 634 aa16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 PMS2CLQ68D20 193 aa16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 NPNTQ6UXI9 565 aa16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 ZNF662Q6ZS27 426 aa16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 USP30Q70CQ3 517 aa16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 LPCAT2Q7L5N7 544 aa16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 TMEFF1Q8IYR6 380 aa16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 HDDC3Q8N4P3 179 aa16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 DEFB119Q8N690 84 aa16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 UBL4BQ8N7F7 174 aa16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 TMIEQ8NEW7 156 aa16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 FAM122AQ96E09 287 aa16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 ZC3H10Q96K80 434 aaKnown RBP16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 WSB2Q9NYS7 404 aaPredicted RBP16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 DTLQ9NZJ0 730 aa16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 WASF2Q9Y6W5 498 aa16.15■□□□□ 0.18
CCDC28A-201ENST00000332797 hCG_1818297A0A087WSY0 165 aa16.14■□□□□ 0.17
CCDC28A-201ENST00000332797 PRR23AA6NEV1 266 aa16.14■□□□□ 0.17
CCDC28A-201ENST00000332797 MIF4GDA9UHW6 222 aaKnown RBP16.14■□□□□ 0.17
CCDC28A-201ENST00000332797 CST8O60676 142 aa16.14■□□□□ 0.17
CCDC28A-201ENST00000332797 RHOBTB1O94844 696 aa16.14■□□□□ 0.17
CCDC28A-201ENST00000332797 MX2P20592 715 aa16.14■□□□□ 0.17
CCDC28A-201ENST00000332797 GKP32189 559 aa16.14■□□□□ 0.17
CCDC28A-201ENST00000332797 PEX5P50542 639 aa16.14■□□□□ 0.17
CCDC28A-201ENST00000332797 ZNF235Q14590 738 aa16.14■□□□□ 0.17
CCDC28A-201ENST00000332797 LBRQ14739 615 aaKnown RBP16.14■□□□□ 0.17
CCDC28A-201ENST00000332797 MYLK3Q32MK0 819 aa16.14■□□□□ 0.17
CCDC28A-201ENST00000332797 LAIR1Q6GTX8 287 aa16.14■□□□□ 0.17
CCDC28A-201ENST00000332797 ARMCX6Q7L4S7 300 aa16.14■□□□□ 0.17
CCDC28A-201ENST00000332797 LRRC49Q8IUZ0 686 aa16.14■□□□□ 0.17
CCDC28A-201ENST00000332797 PLPP6Q8IY26 295 aa16.14■□□□□ 0.17
CCDC28A-201ENST00000332797 LRRN4Q8WUT4 740 aa16.14■□□□□ 0.17
CCDC28A-201ENST00000332797 NSMCE1Q8WV22 266 aa16.14■□□□□ 0.17
CCDC28A-201ENST00000332797 ALG3Q92685 438 aa16.14■□□□□ 0.17
CCDC28A-201ENST00000332797 ALS2CR12Q96Q35 445 aa16.14■□□□□ 0.17
CCDC28A-201ENST00000332797 GPR174Q9BXC1 333 aa16.14■□□□□ 0.17
CCDC28A-201ENST00000332797 HEMGNQ9BXL5 484 aa16.14■□□□□ 0.17
CCDC28A-201ENST00000332797 EVLQ9UI08 416 aaPredicted RBP16.14■□□□□ 0.17
CCDC28A-201ENST00000332797 RNF103O00237 685 aa16.13■□□□□ 0.17
CCDC28A-201ENST00000332797 POP4O95707 220 aaKnown RBP16.13■□□□□ 0.17
CCDC28A-201ENST00000332797 ACSL1P33121 698 aa16.13■□□□□ 0.17
CCDC28A-201ENST00000332797 DRD3P35462 400 aa16.13■□□□□ 0.17
CCDC28A-201ENST00000332797 PLA2G5P39877 138 aa16.13■□□□□ 0.17
CCDC28A-201ENST00000332797 DHPSP49366 369 aaPredicted RBP16.13■□□□□ 0.17
CCDC28A-201ENST00000332797 SLC10A7Q0GE19 358 aa16.13■□□□□ 0.17
CCDC28A-201ENST00000332797 CCDC173Q0VFZ6 552 aa16.13■□□□□ 0.17
CCDC28A-201ENST00000332797 PPP2R5EQ16537 467 aa16.13■□□□□ 0.17
CCDC28A-201ENST00000332797 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP16.13■□□□□ 0.17
CCDC28A-201ENST00000332797 ASCL5Q7RTU5 278 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms